Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

26213753 .. 26215848

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGTGCCTGTGGATGAAGGGCTGCTTCTTTCCATGCTTCTGAAGATGATGAATGCAAAGAAGACACTGGAACTTGGAGTATTTACTGGTTATTCTCTTCTAACTACTGCTCTTGCACTACCTAATGATGGCAAAATCACAGCAATAGATCCAGATAAAGAAGCCTATGAGTTTGGACTCCCATTCATCCAGAAGGCTGGGGTGGATCACAAAATTAACTACTTTGCGTCAGATGCCTTCACAGTTCTGAATGATCTCATTAAGAGTGGCAAGGAAGAAGGGAGCTTTGATTTCGCATTTGTGGATGCAGACAAGGAAAACTACCTCAACTATCACGAGCTTCTGATGAAACTTGTCAAAGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGGACAGTTGCACAACTAGAGGAGAATGTGAAGGAATTGGCTTTAAGGAAAGGCAGAAGTAATGTGGTTGAAGTGAACAATTTTCTAGCCGCTGATCCTCGAGTCGAATTAGCTCTGGTTTCCATTGGAGATGGCCTCACCCTCTGCAGGCGCCTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

188

Amino Acids

20.73

Weight (kDa)

4.89

Isoelectric Point (pI)

18.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	1 - 186	1.8e-75	O-methyltransferase
Methyltransf_24	PF13578	24 - 130	1.1e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	552
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	3 cut(s)	146, 216, 491
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	553
AdeI	CACNNNGTG	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	131, 549
AgsI	TTSAA	1 cut(s)	473
AluBI	AGCT	4 cut(s)	288, 343, 380, 515
AluI	AGCT	4 cut(s)	288, 343, 380, 515
AlwI	GGATC	3 cut(s)	146, 216, 491
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	555
AsuHPI	GGTGA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	552
BauI	CACGAG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	2 cut(s)	125, 527
BfaI	CTAG	3 cut(s)	419, 488, 562
BfmI	CTRYAG	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	556
BisI	GCNGC	2 cut(s)	26, 492
BlsI	GCNGC	2 cut(s)	27, 493
BmeT110I	CYCGRG	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	554
BmsI	GCATC	2 cut(s)	226, 298
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BsaHI	GRCGYC	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 549
Bse1I	ACTGG	2 cut(s)	75, 94
BseGI	GGATG	3 cut(s)	22, 189, 313
BseLI	CCNNNNNNNGG	2 cut(s)	131, 549
BseNI	ACTGG	2 cut(s)	75, 94
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	537
BshNI	GGYRCC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	2 cut(s)	131, 549
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	537
BsoBI	CYCGRG	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	151, 208, 256, 496
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	554
BspMAI	CTGCAG	1 cut(s)	551
BspPI	GGATC	3 cut(s)	146, 216, 491
BspT107I	GGYRCC	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	75, 94
BssMI	GATC	4 cut(s)	151, 208, 256, 496
BssNI	GRCGYC	1 cut(s)	553
BssSI	CACGAG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	247, 396, 409
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	22, 189, 313
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	4 cut(s)	154, 211, 259, 499
BstMBI	GATC	4 cut(s)	151, 208, 256, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	22, 189, 313
BtsIMutI	CAGTG	2 cut(s)	68, 392
Cac8I	GCNNGC	1 cut(s)	551
CfoI	GCGC	1 cut(s)	555
CseI	GACGC	1 cut(s)	219
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	1 cut(s)	37
DinI	GGCGCC	1 cut(s)	554
DpnI	GATC	4 cut(s)	153, 210, 258, 498
DpnII	GATC	4 cut(s)	151, 208, 256, 496
DraIII	CACNNNGTG	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	501
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 171, 377
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	26, 492
FokI	GGATG	3 cut(s)	29, 176, 320
Fsp4HI	GCNGC	2 cut(s)	26, 492
FspBI	CTAG	3 cut(s)	419, 488, 562
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	2 cut(s)	26, 492
GsaI	CCCAGC	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	1 cut(s)	537
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HinfI	GANTC	3 cut(s)	180, 372, 504
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	45, 235, 252, 348
Hpy188III	TCNNGA	3 cut(s)	155, 193, 338
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	5 cut(s)	14, 190, 250, 275, 427
HpyCH4III	ACNGT	3 cut(s)	247, 396, 409
HpyCH4V	TGCA	5 cut(s)	59, 119, 311, 413, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	553
KasI	GGCGCC	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	151, 208, 256, 496
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	8 cut(s)	24, 56, 75, 168, 186, 206, 503, 535
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	2 cut(s)	226, 298
MaeI	CTAG	3 cut(s)	419, 488, 562
MalI	GATC	4 cut(s)	153, 210, 258, 498
MboI	GATC	4 cut(s)	151, 208, 256, 496
MboII	GAAGA	4 cut(s)	58, 76, 92, 290
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	4 cut(s)	216, 437, 481, 509
Mly113I	GGCGCC	1 cut(s)	553
MlyI	GAGTC	2 cut(s)	174, 513
MnlI	CCTC	5 cut(s)	338, 415, 510, 548, 554
MseI	TTAA	3 cut(s)	219, 264, 446
MspA1I	CMGCKG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	236
NarI	GGCGCC	1 cut(s)	553
NdeII	GATC	4 cut(s)	151, 208, 256, 496
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	501
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	27, 493
PleI	GAGTC	2 cut(s)	174, 512
PluTI	GGCGCC	1 cut(s)	556
PpsI	GAGTC	2 cut(s)	174, 512
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	554
PspXI	VCTCGAGB	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	219, 264, 446
SatI	GCNGC	2 cut(s)	26, 492
Sau3AI	GATC	4 cut(s)	151, 208, 256, 496
SchI	GAGTC	2 cut(s)	174, 513
SetI	ASST	6 cut(s)	127, 290, 330, 345, 382, 517
SfaNI	GCATC	2 cut(s)	226, 298
SfcI	CTRYAG	1 cut(s)	547
SfoI	GGCGCC	1 cut(s)	554
Sfr274I	CTCGAG	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	4 cut(s)	216, 437, 481, 509
SsiI	CCGC	1 cut(s)	492
SspDI	GGCGCC	1 cut(s)	552
SspMI	CTAG	3 cut(s)	419, 488, 562
TaaI	ACNGT	3 cut(s)	247, 396, 409
TaqI	TCGA	2 cut(s)	502, 507
TasI	AATT	4 cut(s)	216, 437, 481, 509
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	3 cut(s)	219, 264, 446
Tru9I	TTAA	3 cut(s)	219, 264, 446
TscAI	CASTG	2 cut(s)	75, 399
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	5 cut(s)	17, 33, 68, 178, 365
TspRI	CASTG	2 cut(s)	75, 399
XhoI	CTCGAG	1 cut(s)	501
XspI	CTAG	3 cut(s)	419, 488, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.