Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000131.1

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

148783 .. 152164

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000131.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggcagcagctacgaaagaagagaagttcgatcatgtggtcttagaaaacaagatcttgttccgaagccctgcccttctcaagtacatcctggaaaccagctgctacccgagagaacacgagcaattgaagcgacttagggaagccacggtcaagaaatatgagcagctgtgtattatgaatgtgcctgttgatgaaggtctgcttatctccatgcttctgaagatcatgaatgcgaagaagacattggagttaggggtattcactggttattcacttctcactactgctcttgcacttcctgctgatggcaaaataatagcaatcgatcaggataaagaagcgtacgaggttggattgccattcatcagaaaggccggggtggagcataagattgacttctatcaatcaaatgccttgttattcctaagtgatctcattaaccgtggaaaggaagaaggcagctttgattttgcgtttgtggatgctgataagaacaactacatcaaatatcatgagctgctaatgaagcttgtcaaggttggaggaataatagcttatgacaacactctgtggtttggctcagtagcagaacctgaggaggaggtggctgaatacttcagggaaatcagccgtcatttgaaggaactgaacagcttcctagccgcagatccccgcccacttcctgcagcaggtcaactccagtcaacaagcccaactccggtcagcccacatgtcaactccgatcaacctccggtgaccggcgacttttccagtcagatttccagcgacctatttcgagaaattcctaatttcttagaagcgattacgctcagaaattttatatgttttcgtggtagccttttacgctccgaaactaaccctaattacttgttctctttcaggatgagtaacctgaacaaattggactttgcaccattgggaacaactggctctggatatcacaggtgggttcgtgatgttcgccagcatctcaaggccgatggaatcctggatacgattctcgagcctagccaggatgtgttaactgttgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

352

Amino Acids

39.8

Weight (kDa)

5.51

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	683
AciI	CCGC	2 cut(s)	666, 676
AclWI	GGATC	1 cut(s)	665
AcsI	RAATTY	2 cut(s)	804, 838
AcuI	CTGAAG	2 cut(s)	242, 604
AdeI	CACNNNGTG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	86, 347
AfiI	CCNNNNNNNGG	5 cut(s)	308, 451, 692, 721, 761
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	2 cut(s)	130, 643
AjnI	CCWGG	3 cut(s)	90, 1011, 1035
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	8 cut(s)	11, 102, 169, 465, 520, 532, 557, 657
AluI	AGCT	8 cut(s)	11, 102, 169, 465, 520, 532, 557, 657
AlwI	GGATC	1 cut(s)	665
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	2 cut(s)	109, 1025
AoxI	GGCC	2 cut(s)	375, 999
ApeKI	GCWGC	7 cut(s)	5, 8, 102, 166, 462, 520, 689
ApoI	RAATTY	2 cut(s)	804, 838
Asp700I	GAANNNNTTC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	769
AvaI	CYCGRG	2 cut(s)	109, 1025
AxyI	CCTNAGG	1 cut(s)	597
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	7 cut(s)	17, 20, 89, 178, 474, 507, 701
BccI	CCATC	2 cut(s)	302, 998
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	3 cut(s)	92, 1013, 1037
BciVI	GTATCC	1 cut(s)	1009
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	2 cut(s)	662, 1032
BfmI	CTRYAG	1 cut(s)	687
BfuAI	ACCTGC	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	8 cut(s)	6, 9, 103, 167, 463, 521, 666, 690
BlsI	GCNGC	8 cut(s)	7, 10, 104, 168, 464, 522, 667, 691
Bme1390I	CCNGG	4 cut(s)	92, 379, 1013, 1037
BmeT110I	CYCGRG	2 cut(s)	109, 1025
BmrFI	CCNGG	4 cut(s)	92, 379, 1013, 1037
BmsI	GCATC	2 cut(s)	475, 1000
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	65, 980
BpuMI	CCSGG	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	147, 378, 445
BsaWI	WCCGGW	2 cut(s)	721, 754
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 451, 692, 721, 761
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	4 cut(s)	271, 703, 774, 955
Bse21I	CCTNAGG	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	92, 1013, 1037
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	147, 378, 445
BseGI	GGATG	4 cut(s)	87, 490, 912, 1045
BseLI	CCNNNNNNNGG	5 cut(s)	308, 451, 692, 721, 761
BseMII	CTCAG	3 cut(s)	588, 597, 847
BseNI	ACTGG	4 cut(s)	271, 703, 774, 955
BseRI	GAGGAG	2 cut(s)	614, 617
BseXI	GCAGC	7 cut(s)	17, 20, 89, 178, 474, 507, 701
BshFI	GGCC	2 cut(s)	377, 1001
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	2 cut(s)	109, 1025
BsiSI	CCGG	4 cut(s)	378, 722, 755, 762
BsiWI	CGTACG	1 cut(s)	345
BslI	CCNNNNNNNGG	5 cut(s)	308, 451, 692, 721, 761
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	377, 1001
BsoBI	CYCGRG	2 cut(s)	109, 1025
Bsp143I	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
BspACI	CCGC	2 cut(s)	666, 676
BspANI	GGCC	2 cut(s)	377, 1001
BspCNI	CTCAG	3 cut(s)	589, 596, 846
BspDI	ATCGAT	1 cut(s)	327
BspHI	TCATGA	2 cut(s)	228, 514
BspMAI	CTGCAG	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	4 cut(s)	271, 703, 774, 955
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	147, 378, 445
BssMI	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	3 cut(s)	92, 1013, 1037
Bst4CI	ACNGT	3 cut(s)	151, 446, 1051
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	7 cut(s)	43, 137, 428, 583, 597, 817, 833
BstDSI	CCRYGG	2 cut(s)	147, 445
BstEII	GGTNACC	1 cut(s)	757
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	87, 490, 912, 1045
BstKTI	GATC	7 cut(s)	34, 57, 228, 331, 436, 673, 748
BstMBI	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 302, 529, 867
BstNI	CCWGG	3 cut(s)	92, 1013, 1037
BstNSI	RCATGY	1 cut(s)	737
BstPI	GGTNACC	1 cut(s)	757
BstSCI	CCNGG	4 cut(s)	90, 377, 1011, 1035
BstSFI	CTRYAG	1 cut(s)	687
BstV1I	GCAGC	7 cut(s)	17, 20, 89, 178, 474, 507, 701
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	54, 670
BstYI	RGATCY	2 cut(s)	54, 670
Bsu15I	ATCGAT	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	377, 1001
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	2 cut(s)	147, 445
BtsCI	GGATG	4 cut(s)	87, 490, 912, 1045
BtsIMutI	CAGTG	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	2 cut(s)	228, 514
Cfr10I	RCCGGY	1 cut(s)	761
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	85, 346
CviAII	CATG	5 cut(s)	35, 214, 229, 515, 734
CviQI	GTAC	2 cut(s)	85, 346
DdeI	CTNAG	7 cut(s)	43, 137, 428, 583, 597, 817, 833
DpnI	GATC	7 cut(s)	33, 56, 227, 330, 435, 672, 747
DpnII	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
DraIII	CACNNNGTG	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	242, 604
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	2 cut(s)	109, 1025
Eco91I	GGTNACC	1 cut(s)	757
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoO65I	GGTNACC	1 cut(s)	757
EcoRII	CCWGG	3 cut(s)	90, 1011, 1035
EcoRV	GATATC	1 cut(s)	962
FaeI	CATG	5 cut(s)	38, 217, 232, 518, 737
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 383, 415
FatI	CATG	5 cut(s)	34, 213, 228, 514, 733
FauI	CCCGC	1 cut(s)	683
Fnu4HI	GCNGC	8 cut(s)	6, 9, 103, 167, 463, 521, 666, 690
FokI	GGATG	4 cut(s)	74, 497, 919, 1052
Fsp4HI	GCNGC	8 cut(s)	6, 9, 103, 167, 463, 521, 666, 690
FspBI	CTAG	2 cut(s)	662, 1032
GluI	GCNGC	8 cut(s)	6, 9, 103, 167, 463, 521, 666, 690
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	377, 1001
HapII	CCGG	4 cut(s)	378, 722, 755, 762
Hin1II	CATG	5 cut(s)	38, 217, 232, 518, 737
HincII	GTYRAC	4 cut(s)	698, 708, 739, 1047
HindII	GTYRAC	4 cut(s)	698, 708, 739, 1047
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	1008, 1021
HpaI	GTTAAC	1 cut(s)	1047
HpaII	CCGG	4 cut(s)	378, 722, 755, 762
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	4 cut(s)	698, 708, 739, 1047
Hpy188I	TCNGA	7 cut(s)	65, 222, 371, 745, 780, 836, 874
Hpy188III	TCNNGA	9 cut(s)	154, 229, 332, 515, 800, 904, 957, 977, 1025
Hpy8I	GTNNAC	4 cut(s)	698, 708, 739, 1047
HpyAV	CCTTC	4 cut(s)	86, 191, 452, 637
HpyCH4III	ACNGT	3 cut(s)	151, 446, 1051
HpyCH4V	TGCA	3 cut(s)	296, 689, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 302, 529, 867
HpyF3I	CTNAG	7 cut(s)	43, 137, 428, 583, 597, 817, 833
Hsp92II	CATG	5 cut(s)	38, 217, 232, 518, 737
KspAI	GTTAAC	1 cut(s)	1047
Kzo9I	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
LmnI	GCTCC	2 cut(s)	385, 875
Lsp1109I	GCAGC	7 cut(s)	17, 20, 89, 178, 474, 507, 701
LweI	GCATC	2 cut(s)	475, 1000
MaeI	CTAG	2 cut(s)	662, 1032
MaeIII	GTNAC	2 cut(s)	757, 911
MalI	GATC	7 cut(s)	33, 56, 227, 330, 435, 672, 747
MboI	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
MboII	GAAGA	5 cut(s)	32, 235, 250, 253, 467
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	2 cut(s)	54, 670
MluCI	AATT	6 cut(s)	125, 804, 811, 838, 886, 923
MmeI	TCCRAC	2 cut(s)	334, 523
MnlI	CCTC	6 cut(s)	343, 539, 592, 595, 598, 762
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	441, 1046
MspA1I	CMGCKG	2 cut(s)	102, 169
MspI	CCGG	4 cut(s)	378, 722, 755, 762
MspR9I	CCNGG	4 cut(s)	92, 379, 1013, 1037
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	3 cut(s)	92, 1013, 1037
MwoI	GCNNNNNNNGC	4 cut(s)	130, 302, 529, 867
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
NlaIII	CATG	5 cut(s)	38, 217, 232, 518, 737
NmuCI	GTSAC	1 cut(s)	757
NspI	RCATGY	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	1025
PagI	TCATGA	2 cut(s)	228, 514
PciI	ACATGT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	2 cut(s)	1008, 1021
Pfl23II	CGTACG	1 cut(s)	345
PfoI	TCCNGGA	2 cut(s)	90, 1011
PkrI	GCNGC	8 cut(s)	7, 10, 104, 168, 464, 522, 667, 691
PscI	ACATGT	1 cut(s)	733
Psp6I	CCWGG	3 cut(s)	90, 1011, 1035
PspEI	GGTNACC	1 cut(s)	757
PspGI	CCWGG	3 cut(s)	90, 1011, 1035
PspLI	CGTACG	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	54, 670
PvuII	CAGCTG	2 cut(s)	102, 169
RsaI	GTAC	2 cut(s)	86, 347
RsaNI	GTAC	2 cut(s)	85, 346
SaqAI	TTAA	2 cut(s)	441, 1046
SatI	GCNGC	8 cut(s)	6, 9, 103, 167, 463, 521, 666, 690
Sau3AI	GATC	7 cut(s)	31, 54, 225, 328, 433, 670, 745
ScrFI	CCNGG	4 cut(s)	92, 379, 1013, 1037
SfaNI	GCATC	2 cut(s)	475, 1000
SfcI	CTRYAG	1 cut(s)	687
Sfr274I	CTCGAG	1 cut(s)	1025
SlaI	CTCGAG	1 cut(s)	1025
SmlI	CTYRAG	3 cut(s)	80, 995, 1025
SmoI	CTYRAG	3 cut(s)	80, 995, 1025
Sse9I	AATT	6 cut(s)	125, 804, 811, 838, 886, 923
SsiI	CCGC	2 cut(s)	666, 676
SspMI	CTAG	2 cut(s)	662, 1032
StyD4I	CCNGG	4 cut(s)	90, 377, 1011, 1035
TaaI	ACNGT	3 cut(s)	151, 446, 1051
TaqI	TCGA	4 cut(s)	30, 327, 799, 1026
TasI	AATT	6 cut(s)	125, 804, 811, 838, 886, 923
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	2 cut(s)	1008, 1021
Tru1I	TTAA	2 cut(s)	441, 1046
Tru9I	TTAA	2 cut(s)	441, 1046
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	7 cut(s)	5, 8, 102, 166, 462, 520, 689
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	5 cut(s)	194, 210, 245, 355, 542
TspRI	CASTG	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	690
XapI	RAATTY	2 cut(s)	804, 838
XceI	RCATGY	1 cut(s)	737
XhoI	CTCGAG	1 cut(s)	1025
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	2 cut(s)	662, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.