Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Forward (+)

41279299 .. 41281072

Gene Structure 1774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGGAGAAAGAGAAAAAACAAATCATCAAGAGGTTCCAAAGAAAGAAAGACCAGATCAGAAATGGGAGTAGCAAACCAAGATGCTGTAATTCCTCGCCGCAAGATCCGACATGTCATCAATTCTTGCAAGGAGGAAGGGATTGAAATTCCAGTCCCAACCAGAGCTAGAGACTTGCCAGAGATTGCTAAGAAGATCGATGCCAAGCTCAGTTACTGCCTCTCGGAACTTAATTTGTTGCCTGCTAGTATTTCATCGGTTGATGAGGCGGTTGCCACTTTCATGCAACTGGTGGCATTGTCCAAAGAATCTCTCATAAAAATTCTTGTGAGAGGAGAATTTGATGAGTATCCGGATGACAAGAGCATGCACGGCACTGCAAACCTGGCTGAGATGCTCAATCAGTTCAAGGATGAACGTGGCTGGCTGCATTCCAGCTTTTTCCGACGTGACCTCAAAAGTAACTTCCTACAGTCGGAGATCAACTACTGTATGTTTACTCAGCAGGTGGGAAAAGCCAGTGGTCTTGCAGCGAAACTTGCCGCAGATCTAGCCGCGGTGGAACACCTCCATGATTCCTGGTTTCTGGATATGTTCTGTTATTACGTGATCATGCAAGTAACTCGTTCTGTGTTAATGACTTATCTATCGAGATATGTTCATCTTTGTATCCATGTTGAGTCACTTGTTTATAATCTAATGGACAAAATGACGCAGAGGTCGTATCAGTGGACGCAGGAGAATTATTGTACCGTGAATATGAATGAGGAAACAAAGGAGGAGTTTTTTTCCGAGTATAGTACTAGACTAATGTCCAAATGCAATGAATTCATCCATGGAGTCCTTGATGATCCGGACAAGCCCTCTACAATTATTGTGGACGGTATTGGGGAGATTGTGGTTGAAGGTCTTAGGAGTTACTCGCGTGATCTACTTTCTGAAGCCTTTAGCGTCAGAATGCAATCAATTGCATTTCGGAAGATACACATAGAAACTTTTATTGAAGGTATGGCTTCTCATTTGCAGTCGAGTGTTGCAGACCTTCTGGACACATACATGGATTTGGAGATGTTCGATATGCAGATCTTGAAGAGGCCACATTTTGCTCATGTATTTGAGGATCTGCTTGAGAACTATCCTTTGGCACGCAAGGGTCTTGAAAAGAGAATCAATATGCTCAAGAAAGCTAAGGAGATTTGTGAGGGGATCATGGATGCTTATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

409

Amino Acids

47.18

Weight (kDa)

6.0

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	58 - 246	3.4e-09	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AarI	CACCTGC	1 cut(s)	496
AasI	GACNNNNNNGTC	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	496
AccII	CGCG	2 cut(s)	557, 925
AccIII	TCCGGA	2 cut(s)	352, 853
AciI	CCGC	5 cut(s)	100, 269, 543, 555, 557
AclWI	GGATC	4 cut(s)	100, 845, 1128, 1214
AcsI	RAATTY	4 cut(s)	147, 321, 338, 827
AcuI	CTGAAG	1 cut(s)	960
AfaI	GTAC	2 cut(s)	751, 802
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	146, 409, 905, 1004, 1090, 1160
AjiI	CACGTC	1 cut(s)	449
AjnI	CCWGG	2 cut(s)	384, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	1124, 1156
AluBI	AGCT	4 cut(s)	167, 208, 438, 1187
AluI	AGCT	4 cut(s)	167, 208, 438, 1187
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	100, 845, 1128, 1214
AlwNI	CAGNNNCTG	1 cut(s)	216
Aor13HI	TCCGGA	2 cut(s)	352, 853
AoxI	GGCC	1 cut(s)	1094
ApeKI	GCWGC	2 cut(s)	427, 530
ApoI	RAATTY	4 cut(s)	147, 321, 338, 827
BbvI	GCAGC	2 cut(s)	414, 542
BceAI	ACGGC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	2 cut(s)	386, 580
BciVI	GTATCC	2 cut(s)	360, 680
BclI	TGATCA	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	4 cut(s)	168, 246, 551, 804
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	2 cut(s)	360, 680
BglII	AGATCT	2 cut(s)	547, 1083
BisI	GCNGC	5 cut(s)	100, 428, 531, 543, 555
BlsI	GCNGC	5 cut(s)	101, 429, 532, 544, 556
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	386, 580
BmgBI	CACGTC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	386, 580
BmsI	GCATC	4 cut(s)	73, 190, 384, 1204
BoxI	GACNNNNGTC	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	1188
BpuEI	CTTGAG	2 cut(s)	1148, 1163
Bsa29I	ATCGAT	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	555, 835
BsaWI	WCCGGW	2 cut(s)	352, 853
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	3 cut(s)	152, 294, 519
Bse3DI	GCAATG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	348
BseAI	TCCGGA	2 cut(s)	352, 853
BseBI	CCWGG	2 cut(s)	386, 580
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	555, 835
BseGI	GGATG	4 cut(s)	361, 418, 831, 1219
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	3 cut(s)	223, 381, 515
BseNI	ACTGG	3 cut(s)	152, 294, 519
BseRI	GAGGAG	2 cut(s)	348, 794
BseXI	GCAGC	2 cut(s)	414, 542
Bsh1236I	CGCG	2 cut(s)	557, 925
BshFI	GGCC	1 cut(s)	1096
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	353, 854
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	2 cut(s)	430, 963
BsnI	GGCC	1 cut(s)	1096
Bsp13I	TCCGGA	2 cut(s)	352, 853
Bsp19I	CCATGG	1 cut(s)	835
BspACI	CCGC	5 cut(s)	100, 269, 543, 555, 557
BspANI	GGCC	1 cut(s)	1096
BspCNI	CTCAG	3 cut(s)	222, 382, 514
BspDI	ATCGAT	1 cut(s)	198
BspEI	TCCGGA	2 cut(s)	352, 853
BspFNI	CGCG	2 cut(s)	557, 925
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	4 cut(s)	100, 845, 1128, 1214
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	152, 294, 519
BssECI	CCNNGG	2 cut(s)	555, 835
BssT1I	CCWWGG	1 cut(s)	835
Bst2UI	CCWGG	2 cut(s)	386, 580
Bst4CI	ACNGT	4 cut(s)	474, 491, 754, 884
Bst6I	CTCTTC	1 cut(s)	1085
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	4 cut(s)	243, 368, 425, 1147
BstDEI	CTNAG	6 cut(s)	189, 209, 390, 501, 911, 1188
BstDSI	CCRYGG	2 cut(s)	555, 835
BstF5I	GGATG	4 cut(s)	361, 418, 831, 1219
BstFNI	CGCG	2 cut(s)	557, 925
BstMAI	GTCTC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	372, 386, 539, 551
BstNI	CCWGG	2 cut(s)	386, 580
BstNSI	RCATGY	2 cut(s)	116, 370
BstPAI	GACNNNNGTC	1 cut(s)	811
BstSCI	CCNGG	2 cut(s)	384, 578
BstSFI	CTRYAG	1 cut(s)	470
BstUI	CGCG	2 cut(s)	557, 925
BstV1I	GCAGC	2 cut(s)	414, 542
BstX2I	RGATCY	4 cut(s)	105, 547, 1083, 1120
BstYI	RGATCY	4 cut(s)	105, 547, 1083, 1120
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	2 cut(s)	360, 680
BsuRI	GGCC	1 cut(s)	1096
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	2 cut(s)	555, 835
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	4 cut(s)	361, 418, 831, 1219
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	3 cut(s)	375, 526, 734
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	4 cut(s)	243, 368, 425, 1147
CaiI	CAGNNNCTG	1 cut(s)	216
Cfr42I	CCGCGG	1 cut(s)	558
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	3 cut(s)	721, 742, 940
Csp6I	GTAC	2 cut(s)	750, 801
CspCI	CAANNNNNGTGG	2 cut(s)	858, 893
CviQI	GTAC	2 cut(s)	750, 801
DdeI	CTNAG	6 cut(s)	189, 209, 390, 501, 911, 1188
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	1085
EarI	CTCTTC	1 cut(s)	1085
Eco130I	CCWWGG	1 cut(s)	835
Eco57I	CTGAAG	1 cut(s)	960
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	384, 578
EcoT14I	CCWWGG	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	835
FaqI	GGGAC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	5 cut(s)	100, 428, 531, 543, 555
FokI	GGATG	4 cut(s)	368, 425, 818, 1226
Fsp4HI	GCNGC	5 cut(s)	100, 428, 531, 543, 555
FspBI	CTAG	4 cut(s)	168, 246, 551, 804
GluI	GCNGC	5 cut(s)	100, 428, 531, 543, 555
HaeIII	GGCC	1 cut(s)	1096
HapII	CCGG	2 cut(s)	353, 854
HgaI	GACGC	3 cut(s)	721, 742, 940
HinfI	GANTC	5 cut(s)	308, 575, 680, 840, 1167
HpaII	CCGG	2 cut(s)	353, 854
Hpy166II	GTNNAC	3 cut(s)	498, 732, 880
Hpy188I	TCNGA	9 cut(s)	61, 110, 226, 446, 478, 793, 940, 956, 978
Hpy188III	TCNNGA	9 cut(s)	30, 353, 587, 651, 854, 1046, 1087, 1157, 1180
Hpy8I	GTNNAC	3 cut(s)	498, 732, 880
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	4 cut(s)	131, 899, 998, 1052
HpyCH4III	ACNGT	4 cut(s)	474, 491, 754, 884
HpyCH4IV	ACGT	3 cut(s)	418, 448, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	372, 386, 539, 551
HpyF3I	CTNAG	6 cut(s)	189, 209, 390, 501, 911, 1188
HpySE526I	ACGT	3 cut(s)	418, 448, 606
Kpn2I	TCCGGA	2 cut(s)	352, 853
Ksp22I	TGATCA	1 cut(s)	609
KspI	CCGCGG	1 cut(s)	558
Lsp1109I	GCAGC	2 cut(s)	414, 542
LweI	GCATC	4 cut(s)	73, 190, 384, 1204
MaeI	CTAG	4 cut(s)	168, 246, 551, 804
MaeII	ACGT	3 cut(s)	418, 448, 606
MaeIII	GTNAC	6 cut(s)	212, 449, 461, 619, 681, 917
MboII	GAAGA	3 cut(s)	205, 991, 1102
MfeI	CAATTG	1 cut(s)	966
MflI	RGATCY	4 cut(s)	105, 547, 1083, 1120
MlyI	GAGTC	2 cut(s)	689, 849
MmeI	TCCRAC	3 cut(s)	133, 456, 469
MroI	TCCGGA	2 cut(s)	352, 853
MseI	TTAA	2 cut(s)	231, 635
MslI	CAYNNNNRTG	3 cut(s)	281, 570, 1055
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	353, 854
MspR9I	CCNGG	2 cut(s)	386, 580
MunI	CAATTG	1 cut(s)	966
Mva1269I	GAATGC	2 cut(s)	430, 963
MvaI	CCWGG	2 cut(s)	386, 580
MvnI	CGCG	2 cut(s)	557, 925
MwoI	GCNNNNNNNGC	4 cut(s)	372, 386, 539, 551
NcoI	CCATGG	1 cut(s)	835
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	449, 681
NspI	RCATGY	2 cut(s)	116, 370
PaeI	GCATGC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	496
PciI	ACATGT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	719
PctI	GAATGC	2 cut(s)	430, 963
PfeI	GAWTC	3 cut(s)	308, 575, 1167
PkrI	GCNGC	5 cut(s)	101, 429, 532, 544, 556
PleI	GAGTC	2 cut(s)	688, 848
PpsI	GAGTC	2 cut(s)	688, 848
Ppu21I	YACGTR	1 cut(s)	607
PscI	ACATGT	1 cut(s)	112
PshAI	GACNNNNGTC	1 cut(s)	811
PsiI	TTATAA	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	384, 578
PspGI	CCWGG	2 cut(s)	384, 578
PspN4I	GGNNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	4 cut(s)	105, 547, 1083, 1120
RsaI	GTAC	2 cut(s)	751, 802
RsaNI	GTAC	2 cut(s)	750, 801
RseI	CAYNNNNRTG	3 cut(s)	281, 570, 1055
SacII	CCGCGG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	231, 635
SatI	GCNGC	5 cut(s)	100, 428, 531, 543, 555
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	2 cut(s)	689, 849
ScrFI	CCNGG	2 cut(s)	386, 580
SfaNI	GCATC	4 cut(s)	73, 190, 384, 1204
SfcI	CTRYAG	1 cut(s)	470
Sfr303I	CCGCGG	1 cut(s)	558
SgrBI	CCGCGG	1 cut(s)	558
SmiMI	CAYNNNNRTG	3 cut(s)	281, 570, 1055
SmlI	CTYRAG	2 cut(s)	1127, 1178
SmoI	CTYRAG	2 cut(s)	1127, 1178
SphI	GCATGC	1 cut(s)	370
SsiI	CCGC	5 cut(s)	100, 269, 543, 555, 557
SspMI	CTAG	4 cut(s)	168, 246, 551, 804
StyD4I	CCNGG	2 cut(s)	384, 578
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	4 cut(s)	474, 491, 754, 884
TaiI	ACGT	3 cut(s)	421, 451, 609
TaqI	TCGA	4 cut(s)	198, 650, 1028, 1074
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	3 cut(s)	102, 545, 557
TfiI	GAWTC	3 cut(s)	308, 575, 1167
Tru1I	TTAA	2 cut(s)	231, 635
Tru9I	TTAA	2 cut(s)	231, 635
TscAI	CASTG	3 cut(s)	382, 526, 734
TseFI	GTSAC	2 cut(s)	449, 681
TseI	GCWGC	2 cut(s)	427, 530
Tsp45I	GTSAC	2 cut(s)	449, 681
TspDTI	ATGAA	7 cut(s)	243, 271, 429, 650, 776, 820, 840
TspRI	CASTG	3 cut(s)	382, 526, 734
XapI	RAATTY	4 cut(s)	147, 321, 338, 827
XceI	RCATGY	2 cut(s)	116, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	4 cut(s)	168, 246, 551, 804
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.