Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000994

Physical Location & Seq

Genomic Coordinates Reverse (-)

53685396 .. 53705470

Gene Structure 20075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAGACAAGATCCTCCTCAAAAGCCCAGCCCTTCTCAAGTATATCTTTGAAAGAAGCTGCTTTCCAAGAGAGCACGAGCAATTGAAGGAACTAGGGGAAGCCACTGTCGAGAAATACCCGTTCTGGAGTATTATGAATGTGTCCGTTGATGAAGGGCTGCTTCTCTCCTTGTTTCTAAAGATGATGAATGCAAAGAAGACATTGGAGCTGGGAATGTTTACTGGTTATTCACTTCTTTCCACTGCTCTTGCATTACCCGAGGATGGCAAAATAACAGCTATAGACCCAGATAAAGAGGCCTACGAGTTTGGACTGCCGTTCTTTCAAAAGGCTGGGGTGGAGCATAAAATTGACTTCTTTCCCTCAGATGCCTTCACAGTCTTAAATGATCTCATTAGCAGTGGCAAGGAAGAAGGGAGCTTTGATTTCGCATTTGTGGATGCGGACAAGCAAAACTATCTCAAGTATCATGAGCTTCTAATGAAACTTGTTAAGGTTGGTGGAATCATAGCTTACGATAACACACTGTGGTTTGGAACAGTTGCAGAAACTGAGGAAGTGATGAAGGAATCATATTTAAGGGAAGGCAGAAATGATGTGATTGAAGTGAACAATTATCTAGCCGCCGATCCTCGCGTCGAATTAGCTCTTGTTTCCATTGGGGATGGCCTCACCCTCTGCAGGCGCCTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016137 GO:0016138 GO:0016740 GO:0016741 GO:0032259 GO:0033485 GO:0033486 GO:0042440 GO:0043167 GO:0043169 GO:0043473 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0071704 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00944 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00944 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

232

Amino Acids

26.33

Weight (kDa)

4.75

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 231	1.5e-79	O-methyltransferase
Methyltransf_24	PF13578	69 - 175	8.6e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24735 AT1G24735 AT1G24735 AT1G67980 AT1G67980 AT1G67990
fragaria_vesca	FvH4_1g06880 FvH4_4g23870 FvH4_4g23870 FvH4_4g23880 FvH4_4g23880 FvH4_5g35170 FvH4_5g35170
malus_domestica	MD02G1073200.v1.1 MD02G1230800.v1.1 MD13G1117900.v1.1 MD16G1119200.v1.1 MD16G1119300.v1.1
prunus_persica	Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.1G227100_v2.0.a1 Prupe.2G107200_v2.0.a1 Prupe.2G107300_v2.0.a1
pyrus_communis	pycom02g19990 pycom13g10240 pycom16g10120
rosa_chinensis	RchiOBHm_Chr0c11g0499431 RchiOBHm_Chr4g0430461 RchiOBHm_Chr4g0430471 RchiOBHm_Chr4g0430481 RchiOBHm_Chr7g0236261
rosa_laevigata	RLG00000001094 RLG00000001944 RLG00000006974 RLG00000006975
rosa_multiflora	Rmu_co8207790.1_g000001 Rmu_co8303449.1_g000001 Rmu_sc0000131.1_g000035 Rmu_sc0000131.1_g000038 Rmu_sc0017358.1_g000001 Rmu_sc0017359.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147630 Rroxscaffold_2G00147640 Rroxscaffold_5G00372230 Rroxscaffold_5G00372250
rosa_rugosa	Rorug04G0243400 Rorug04G0243500 Rorug04G0243500 Rorug04G0243600
rosa_samantha	Rh4AG299800 Rh4BG306800 Rh4BG306900 Rh4CG322700 Rh4CG323000 Rh4DG303800 Rh4DG304000 Rh4DG304100 Rh7BG421700
rosa_wichuraiana	Rw4G026020 Rw4G026030 Rw7G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	687
AccII	CGCG	1 cut(s)	639
AciI	CCGC	2 cut(s)	446, 627
AclWI	GGATC	2 cut(s)	7, 626
AcyI	GRCGYC	1 cut(s)	688
AdeI	CACNNNGTG	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	266, 684
AgsI	TTSAA	4 cut(s)	53, 88, 329, 608
AluBI	AGCT	7 cut(s)	60, 211, 281, 423, 478, 515, 650
AluI	AGCT	7 cut(s)	60, 211, 281, 423, 478, 515, 650
Alw21I	GWGCWC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	7, 626
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	300, 670
ApeKI	GCWGC	2 cut(s)	60, 160
AspLEI	GCGC	1 cut(s)	690
AsuHPI	GGTGA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	687
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	12, 206
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	47, 147
BccI	CCATC	2 cut(s)	260, 662
BceAI	ACGGC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	95, 623
BfmI	CTRYAG	2 cut(s)	282, 682
BfoI	RGCGCY	1 cut(s)	691
BisI	GCNGC	3 cut(s)	61, 161, 627
BlsI	GCNGC	3 cut(s)	62, 162, 628
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	689
BmsI	GCATC	2 cut(s)	361, 433
BpiI	GAAGAC	2 cut(s)	12, 206
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	2 cut(s)	23, 449
BsaHI	GRCGYC	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 684
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	271, 448, 673
BseLI	CCNNNNNNNGG	2 cut(s)	266, 684
BseMII	CTCAG	2 cut(s)	381, 546
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	47, 147
BseYI	CCCAGC	3 cut(s)	28, 211, 335
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	302, 672
BshNI	GGYRCC	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	266, 684
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	302, 672
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	12, 391, 631
BspACI	CCGC	2 cut(s)	446, 627
BspANI	GGCC	2 cut(s)	302, 672
BspCNI	CTCAG	2 cut(s)	380, 547
BspFNI	CGCG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	689
BspMAI	CTGCAG	1 cut(s)	686
BspPI	GGATC	2 cut(s)	7, 626
BspT107I	GGYRCC	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	12, 391, 631
BssNI	GRCGYC	1 cut(s)	688
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	109, 382, 531, 544
BstACI	GRCGYC	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	2 cut(s)	367, 555
BstF5I	GGATG	3 cut(s)	271, 448, 673
BstFNI	CGCG	1 cut(s)	639
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	3 cut(s)	15, 394, 634
BstMBI	GATC	3 cut(s)	12, 391, 631
BstSFI	CTRYAG	2 cut(s)	282, 682
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	2 cut(s)	47, 147
BstV2I	GAAGAC	2 cut(s)	12, 206
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	302, 672
BtsCI	GGATG	3 cut(s)	271, 448, 673
BtsI	GCAGTG	2 cut(s)	243, 409
BtsIMutI	CAGTG	4 cut(s)	105, 243, 409, 527
Cac8I	GCNNGC	1 cut(s)	686
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	1 cut(s)	690
CseI	GACGC	1 cut(s)	628
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	1 cut(s)	473
DdeI	CTNAG	2 cut(s)	367, 555
DinI	GGCGCC	1 cut(s)	689
DpnI	GATC	3 cut(s)	14, 393, 633
DpnII	GATC	3 cut(s)	12, 391, 631
DraIII	CACNNNGTG	1 cut(s)	531
Eco147I	AGGCCT	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	689
EheI	GGCGCC	1 cut(s)	689
FaeI	CATG	1 cut(s)	476
FaiI	YATR	7 cut(s)	45, 137, 284, 348, 474, 512, 577
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 147, 179
FatI	CATG	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	61, 161, 627
FokI	GGATG	3 cut(s)	278, 455, 680
Fsp4HI	GCNGC	3 cut(s)	61, 161, 627
FspBI	CTAG	2 cut(s)	95, 623
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	3 cut(s)	61, 161, 627
GsaI	CCCAGC	3 cut(s)	32, 215, 339
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	2 cut(s)	302, 672
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	1 cut(s)	690
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	1 cut(s)	476
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HinfI	GANTC	2 cut(s)	507, 572
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	2 cut(s)	222, 613
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	3 cut(s)	112, 127, 473
Hpy8I	GTNNAC	2 cut(s)	222, 613
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	7 cut(s)	44, 82, 149, 385, 410, 562, 581
HpyCH4III	ACNGT	4 cut(s)	109, 382, 531, 544
HpyCH4V	TGCA	4 cut(s)	194, 254, 548, 684
HpyF3I	CTNAG	2 cut(s)	367, 555
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	1 cut(s)	476
HspAI	GCGC	1 cut(s)	688
KasI	GGCGCC	1 cut(s)	687
Kzo9I	GATC	3 cut(s)	12, 391, 631
LmnI	GCTCC	3 cut(s)	208, 343, 420
LpnPI	CCDG	7 cut(s)	42, 112, 197, 210, 303, 321, 670
Lsp1109I	GCAGC	2 cut(s)	47, 147
LweI	GCATC	2 cut(s)	361, 433
MaeI	CTAG	2 cut(s)	95, 623
MalI	GATC	3 cut(s)	14, 393, 633
MboI	GATC	3 cut(s)	12, 391, 631
MboII	GAAGA	3 cut(s)	17, 211, 425
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	4 cut(s)	83, 351, 616, 644
Mly113I	GGCGCC	1 cut(s)	688
MnlI	CCTC	9 cut(s)	26, 29, 256, 292, 376, 550, 645, 683, 689
MseI	TTAA	3 cut(s)	386, 495, 581
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	196
MvnI	CGCG	1 cut(s)	639
NarI	GGCGCC	1 cut(s)	688
NdeII	GATC	3 cut(s)	12, 391, 631
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	1 cut(s)	689
PagI	TCATGA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	302
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	507, 572
PkrI	GCNGC	3 cut(s)	62, 162, 628
PluTI	GGCGCC	1 cut(s)	691
PspFI	CCCAGC	3 cut(s)	28, 211, 335
PspN4I	GGNNCC	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	386, 495, 581
SatI	GCNGC	3 cut(s)	61, 161, 627
Sau3AI	GATC	3 cut(s)	12, 391, 631
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	62, 213, 283, 425, 480, 501, 517, 652
SfaNI	GCATC	2 cut(s)	361, 433
SfcI	CTRYAG	2 cut(s)	282, 682
SfoI	GGCGCC	1 cut(s)	689
SmlI	CTYRAG	2 cut(s)	38, 464
SmoI	CTYRAG	2 cut(s)	38, 464
Sse9I	AATT	4 cut(s)	83, 351, 616, 644
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	446, 627
SspDI	GGCGCC	1 cut(s)	687
SspMI	CTAG	2 cut(s)	95, 623
StuI	AGGCCT	1 cut(s)	302
TaaI	ACNGT	4 cut(s)	109, 382, 531, 544
TaqI	TCGA	2 cut(s)	111, 642
TasI	AATT	4 cut(s)	83, 351, 616, 644
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	507, 572
Tru1I	TTAA	3 cut(s)	386, 495, 581
Tru9I	TTAA	3 cut(s)	386, 495, 581
TscAI	CASTG	4 cut(s)	112, 250, 409, 534
TseI	GCWGC	2 cut(s)	60, 160
TspDTI	ATGAA	5 cut(s)	152, 168, 203, 500, 581
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	4 cut(s)	112, 250, 409, 534
XspI	CTAG	2 cut(s)	95, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.