AT1G34046

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000496
Physical Location & Seq
Forward (+)
12388595 .. 12389447
853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34046.1

Sequence Viewer

Length: 294 bp
ATGGTTTCACACCTTTGCATTTGGCGGCCATGCATGAAATGCTCAATTCCAATTCTCAATGATTTTTCGGATAAGGCTCCAAGATATTTCGACATTCTAACACTAGGAAAAGAAACCGTCTTCCATCTAGCTGTGGAACACAAAAATATACCAACGTTCTATATCGTGGCAGAGAGTCCCGATAGAAACAATCTTCTCCACCAGGTAGATAGATATGACAACACCGTACTACACATTGCGGTCATGTCCAGCTGCTATTCCGTGATACTCTACATCACTATGATACAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

97

Amino Acids

11.29

Weight (kDa)

6.48

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 239
AclI AACGTT 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 26
AfaI GTAC 1 cut(s) 228
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 131, 252
AluI AGCT 2 cut(s) 131, 252
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 203
BfaI CTAG 2 cut(s) 104, 128
BisI GCNGC 2 cut(s) 26, 253
BlsI GCNGC 2 cut(s) 27, 254
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 1 cut(s) 28
BspACI CCGC 2 cut(s) 25, 239
BspANI GGCC 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 118, 226
BstAPI GCANNNNNTGC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 30, 34, 244
CviJI RGCY 4 cut(s) 28, 77, 131, 252
CviKI_1 RGCY 4 cut(s) 28, 77, 131, 252
CviQI GTAC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 35
FaeI CATG 3 cut(s) 33, 37, 247
FaiI YATR 7 cut(s) 31, 35, 149, 162, 216, 245, 281
FaqI GGGAC 1 cut(s) 162
FatI CATG 3 cut(s) 29, 33, 243
Fnu4HI GCNGC 2 cut(s) 26, 253
Fsp4HI GCNGC 2 cut(s) 26, 253
FspBI CTAG 2 cut(s) 104, 128
GluI GCNGC 2 cut(s) 26, 253
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 3 cut(s) 33, 37, 247
HinfI GANTC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 118, 226
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 18, 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 3 cut(s) 33, 37, 247
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 188, 215, 262
Lsp1109I GCAGC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 2 cut(s) 104, 128
MaeII ACGT 1 cut(s) 155
MboII GAAGA 2 cut(s) 112, 185
MluCI AATT 2 cut(s) 45, 51
MlyI GAGTC 1 cut(s) 184
Mph1103I ATGCAT 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 39
NlaIII CATG 3 cut(s) 33, 37, 247
NlaIV GGNNCC 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 27, 254
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 252
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 278
SatI GCNGC 2 cut(s) 26, 253
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 15, 133, 158, 207, 254
SexAI ACCWGGT 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 2 cut(s) 45, 51
SsiI CCGC 2 cut(s) 25, 239
SspMI CTAG 2 cut(s) 104, 128
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 118, 226
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 45, 51
TauI GCSGC 1 cut(s) 28
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 250
XspI CTAG 2 cut(s) 104, 128
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.