Rmu_sc0005914.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005914.1
OG0000496
Physical Location & Seq
Reverse (-)
2 .. 1835
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005914.1_g000001.1.cds

Sequence Viewer

Length: 1190 bp
atggatttcaggattttagaggcaattgagagaaaggacatagtcacatttgctagcttagtccgagaaaatgaaggaattctcgagcaaagagaagctgatactctgaacacgccattacaccttgtgtcaaagtttggatgccttgaaatggcatctgaaattgtttctttgtgcccggacatggttgctgctgagaataagaaccaggagactccagtccatgaagcttgtcgaacagggaatccccggattttaaacatactactggaagctaatcctgaagtagttagtaagcttaacagtaaagagaaaatcagtgcactttctctggcatgtagctatggtcatcttgatgtggtgaggctcttactgaaagagcctgggaagctgggtttagggaaaaaagggtttgatcaaacatgtatacacttggctgtctctggtggacacatggatgttgttaaagagttgctaagagtgtgtcctgaccttgcttatatggttgatgagaaaggaaactatccattgcactatgcaactagcaaagaaaacagggagataacctggacactccttaagcttgatccaaagcttgctcagcagcacaatctcagtggtcacacacccttgcacttggcagcaataaactacaaagtctcagtccttcaagtttttgtctcaatggctaaaccatcttttcagatcgtaacaaaagccggagagacagtattccacttggctgtgaaatatgggcgctatgatgctatagtatacttgacctatgtctgtgatgatgcggatttctttgactgtcgagaccgttatagtaacaccatcctacatcttgcagtttctgaagcacagcataagatagcagagtacctaatcagcaaaaaaaaagtggagctcaattctagaaacaatgaaggactgacagcccttgacctcctcaaacagagcaaggaaagtgaagacaatcagcgtcttgaagccatgctaatgaaagcaggaggtaaaacaaggattgaactgttatctacttcaccaaaagctgataaagccactactcagccagtgacacttcctgaaaacattccaaaacgagctcaattttttaaagagcatgaactgcagttgtccatagcttggtctgctgcatccaagtccccatcaagatcatcagcacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

397

Amino Acids

44.28

Weight (kDa)

6.9

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1149
AccI GTMKAC 2 cut(s) 427, 774
AciI CCGC 1 cut(s) 800
AclWI GGATC 1 cut(s) 581
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 303, 879
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 3 cut(s) 151, 184, 1149
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 4 cut(s) 149, 671, 992, 1031
AjnI CCWGG 3 cut(s) 207, 382, 566
AloI GAACNNNNNNTCC 2 cut(s) 229, 261
Alw21I GWGCWC 3 cut(s) 325, 912, 1111
Alw26I GTCTC 6 cut(s) 206, 445, 664, 685, 719, 813
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 83
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 4 cut(s) 191, 604, 641, 1157
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
Asp700I GAANNNNTTC 2 cut(s) 78, 1095
AspLEI GCGC 1 cut(s) 759
AsuC2I CCSGG 2 cut(s) 179, 250
AsuHPI GGTGA 2 cut(s) 373, 1038
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 83
BaeGI GKGCMC 2 cut(s) 179, 325
BanII GRGCYC 2 cut(s) 912, 1111
BbsI GAAGAC 1 cut(s) 981
Bbv12I GWGCWC 3 cut(s) 325, 912, 1111
BbvI GCAGC 4 cut(s) 178, 616, 653, 1144
BccI CCATC 3 cut(s) 703, 845, 1180
BciT130I CCWGG 3 cut(s) 209, 384, 568
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 2 cut(s) 179, 250
BcoDI GTCTC 6 cut(s) 206, 445, 664, 685, 719, 813
BfaI CTAG 3 cut(s) 54, 543, 918
BfmI CTRYAG 2 cut(s) 768, 1133
BfoI RGCGCY 1 cut(s) 760
BfrI CTTAAG 1 cut(s) 578
BisI GCNGC 4 cut(s) 192, 605, 642, 1158
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 4 cut(s) 193, 606, 643, 1159
Bme1390I CCNGG 5 cut(s) 179, 209, 250, 384, 568
BmeT110I CYCGRG 1 cut(s) 83
BmrFI CCNGG 5 cut(s) 179, 209, 250, 384, 568
BmsI GCATC 5 cut(s) 131, 164, 754, 787, 1169
BmtI GCTAGC 1 cut(s) 57
BoxI GACNNNNGTC 2 cut(s) 218, 785
BpiI GAAGAC 1 cut(s) 981
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 600
BpuMI CCSGG 2 cut(s) 179, 250
BsaI GGTCTC 1 cut(s) 813
BsaJI CCNNGG 2 cut(s) 248, 383
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 184, 1149
Bse1I ACTGG 3 cut(s) 218, 273, 1076
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 3 cut(s) 209, 384, 568
BseDI CCNNGG 2 cut(s) 248, 383
BseGI GGATG 4 cut(s) 146, 463, 837, 1160
BseLI CCNNNNNNNGG 3 cut(s) 151, 184, 1149
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 5 cut(s) 186, 614, 628, 675, 1085
BseNI ACTGG 3 cut(s) 218, 273, 1076
BseRI GAGGAG 1 cut(s) 941
BseSI GKGCMC 2 cut(s) 179, 325
BseXI GCAGC 4 cut(s) 178, 616, 653, 1144
BseYI CCCAGC 1 cut(s) 391
BsiHKAI GWGCWC 3 cut(s) 325, 912, 1111
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 3 cut(s) 179, 250, 720
BslFI GGGAC 1 cut(s) 1153
BslI CCNNNNNNNGG 3 cut(s) 151, 184, 1149
BsmAI GTCTC 6 cut(s) 206, 445, 664, 685, 719, 813
BsmFI GGGAC 1 cut(s) 1153
Bso31I GGTCTC 1 cut(s) 813
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 4 cut(s) 179, 325, 912, 1111
Bsp143I GATC 4 cut(s) 415, 586, 705, 1178
Bsp1720I GCTNAGC 1 cut(s) 600
BspACI CCGC 1 cut(s) 800
BspCNI CTCAG 5 cut(s) 187, 613, 627, 674, 1084
BspMAI CTGCAG 1 cut(s) 1137
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 581
BspTI CTTAAG 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 813
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 3 cut(s) 218, 273, 1076
BssECI CCNNGG 2 cut(s) 248, 383
BssMI GATC 4 cut(s) 415, 586, 705, 1178
BssNAI GTATAC 2 cut(s) 428, 775
Bst1107I GTATAC 2 cut(s) 428, 775
Bst2UI CCWGG 3 cut(s) 209, 384, 568
Bst4CI ACNGT 5 cut(s) 305, 730, 815, 824, 1035
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstC8I GCNNGC 2 cut(s) 55, 597
BstDEI CTNAG 7 cut(s) 58, 195, 476, 600, 614, 661, 1071
BstF5I GGATG 4 cut(s) 146, 463, 837, 1160
BstH2I RGCGCY 1 cut(s) 760
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 4 cut(s) 418, 589, 708, 1181
BstMAI GTCTC 6 cut(s) 206, 445, 664, 685, 719, 813
BstMBI GATC 4 cut(s) 415, 586, 705, 1178
BstMWI GCNNNNNNNGC 5 cut(s) 388, 601, 1061, 1132, 1154
BstNI CCWGG 3 cut(s) 209, 384, 568
BstNSI RCATGY 2 cut(s) 339, 426
BstPAI GACNNNNGTC 2 cut(s) 218, 785
BstSCI CCNGG 5 cut(s) 177, 207, 248, 382, 566
BstSFI CTRYAG 2 cut(s) 768, 1133
BstSLI GKGCMC 2 cut(s) 179, 325
BstV1I GCAGC 4 cut(s) 178, 616, 653, 1144
BstV2I GAAGAC 1 cut(s) 981
BstZ17I GTATAC 2 cut(s) 428, 775
BtsCI GGATG 4 cut(s) 146, 463, 837, 1160
BtsIMutI CAGTG 3 cut(s) 325, 622, 1083
Cac8I GCNNGC 2 cut(s) 55, 597
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 1 cut(s) 759
CseI GACGC 1 cut(s) 974
Csp6I GTAC 1 cut(s) 883
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 7 cut(s) 184, 224, 336, 423, 454, 997, 1127
CviQI GTAC 1 cut(s) 883
DdeI CTNAG 7 cut(s) 58, 195, 476, 600, 614, 661, 1071
DpnI GATC 4 cut(s) 417, 588, 707, 1180
DpnII GATC 4 cut(s) 415, 586, 705, 1178
DraI TTTAAA 2 cut(s) 258, 1120
DraIII CACNNNGTG 1 cut(s) 127
Ecl136II GAGCTC 2 cut(s) 910, 1109
Eco24I GRGCYC 2 cut(s) 912, 1111
Eco31I GGTCTC 1 cut(s) 813
Eco53kI GAGCTC 2 cut(s) 910, 1109
Eco57I CTGAAG 2 cut(s) 303, 879
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 2 cut(s) 910, 1109
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 3 cut(s) 207, 382, 566
EcoT38I GRGCYC 2 cut(s) 912, 1111
FaeI CATG 7 cut(s) 187, 227, 339, 426, 457, 1000, 1130
FaqI GGGAC 1 cut(s) 1153
FatI CATG 7 cut(s) 183, 223, 335, 422, 453, 996, 1126
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 2 cut(s) 427, 774
Fnu4HI GCNGC 4 cut(s) 192, 605, 642, 1158
FokI GGATG 4 cut(s) 153, 470, 824, 1147
FriOI GRGCYC 2 cut(s) 912, 1111
Fsp4HI GCNGC 4 cut(s) 192, 605, 642, 1158
FspBI CTAG 3 cut(s) 54, 543, 918
GlaI GCGC 1 cut(s) 758
GluI GCNGC 4 cut(s) 192, 605, 642, 1158
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 760
HapII CCGG 3 cut(s) 179, 250, 720
HgaI GACGC 1 cut(s) 974
HhaI GCGC 1 cut(s) 759
Hin1II CATG 7 cut(s) 187, 227, 339, 426, 457, 1000, 1130
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HindIII AAGCTT 4 cut(s) 228, 296, 581, 593
HinfI GANTC 2 cut(s) 214, 244
HpaII CCGG 3 cut(s) 179, 250, 720
HphI GGTGA 2 cut(s) 373, 1038
Hpy166II GTNNAC 4 cut(s) 323, 428, 449, 775
Hpy188I TCNGA 5 cut(s) 65, 108, 160, 705, 859
Hpy8I GTNNAC 4 cut(s) 323, 428, 449, 775
HpyAV CCTTC 3 cut(s) 68, 677, 923
HpyCH4III ACNGT 5 cut(s) 305, 730, 815, 824, 1035
HpyCH4V TGCA 7 cut(s) 323, 532, 539, 634, 851, 1135, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 388, 601, 1061, 1132, 1154
HpyF3I CTNAG 7 cut(s) 58, 195, 476, 600, 614, 661, 1071
Hsp92II CATG 7 cut(s) 187, 227, 339, 426, 457, 1000, 1130
HspAI GCGC 1 cut(s) 757
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 415, 586, 705, 1178
LmnI GCTCC 1 cut(s) 907
Lsp1109I GCAGC 4 cut(s) 178, 616, 653, 1144
LweI GCATC 5 cut(s) 131, 164, 754, 787, 1169
MaeI CTAG 3 cut(s) 54, 543, 918
MaeIII GTNAC 5 cut(s) 43, 620, 709, 830, 1078
MalI GATC 4 cut(s) 417, 588, 707, 1180
MboI GATC 4 cut(s) 415, 586, 705, 1178
MboII GAAGA 1 cut(s) 986
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 4 cut(s) 179, 325, 912, 1111
MluCI AATT 5 cut(s) 24, 78, 162, 913, 1112
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 5 cut(s) 13, 357, 959, 962, 1007
MroXI GAANNNNTTC 2 cut(s) 78, 1095
MseI TTAA 5 cut(s) 257, 300, 465, 579, 1119
MslI CAYNNNNRTG 3 cut(s) 354, 456, 1001
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 3 cut(s) 179, 250, 720
MspR9I CCNGG 5 cut(s) 179, 209, 250, 384, 568
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 3 cut(s) 209, 384, 568
MwoI GCNNNNNNNGC 5 cut(s) 388, 601, 1061, 1132, 1154
NciI CCSGG 2 cut(s) 179, 250
NdeII GATC 4 cut(s) 415, 586, 705, 1178
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 7 cut(s) 187, 227, 339, 426, 457, 1000, 1130
NmuCI GTSAC 3 cut(s) 43, 620, 1078
NspI RCATGY 2 cut(s) 339, 426
PaeR7I CTCGAG 1 cut(s) 83
PciI ACATGT 1 cut(s) 422
PdmI GAANNNNTTC 2 cut(s) 78, 1095
PfeI GAWTC 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 1149
PkrI GCNGC 4 cut(s) 193, 606, 643, 1159
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 422
PshAI GACNNNNGTC 2 cut(s) 218, 785
Psp124BI GAGCTC 2 cut(s) 912, 1111
Psp6I CCWGG 3 cut(s) 207, 382, 566
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 207, 382, 566
PstI CTGCAG 1 cut(s) 1137
PstNI CAGNNNCTG 1 cut(s) 857
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
RseI CAYNNNNRTG 3 cut(s) 354, 456, 1001
SacI GAGCTC 2 cut(s) 912, 1111
SaqAI TTAA 5 cut(s) 257, 300, 465, 579, 1119
SatI GCNGC 4 cut(s) 192, 605, 642, 1158
Sau3AI GATC 4 cut(s) 415, 586, 705, 1178
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 5 cut(s) 179, 209, 250, 384, 568
SduI GDGCHC 4 cut(s) 179, 325, 912, 1111
SfaNI GCATC 5 cut(s) 131, 164, 754, 787, 1169
SfcI CTRYAG 2 cut(s) 768, 1133
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 3 cut(s) 354, 456, 1001
SmlI CTYRAG 2 cut(s) 83, 578
SmoI CTYRAG 2 cut(s) 83, 578
Sse9I AATT 5 cut(s) 24, 78, 162, 913, 1112
SsiI CCGC 1 cut(s) 800
SspMI CTAG 3 cut(s) 54, 543, 918
SstI GAGCTC 2 cut(s) 912, 1111
StyD4I CCNGG 5 cut(s) 177, 207, 248, 382, 566
TaaI ACNGT 5 cut(s) 305, 730, 815, 824, 1035
TaqI TCGA 3 cut(s) 84, 235, 817
TasI AATT 5 cut(s) 24, 78, 162, 913, 1112
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 5 cut(s) 257, 300, 465, 579, 1119
Tru9I TTAA 5 cut(s) 257, 300, 465, 579, 1119
TscAI CASTG 3 cut(s) 325, 622, 1083
TseFI GTSAC 3 cut(s) 43, 620, 1078
TseI GCWGC 4 cut(s) 191, 604, 641, 1157
Tsp45I GTSAC 3 cut(s) 43, 620, 1078
TspDTI ATGAA 5 cut(s) 87, 240, 942, 1019, 1143
TspRI CASTG 3 cut(s) 325, 622, 1083
Tth111I GACNNNGTC 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 1149
Vha464I CTTAAG 1 cut(s) 578
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 917
XceI RCATGY 2 cut(s) 339, 426
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 427, 774
XmnI GAANNNNTTC 2 cut(s) 78, 1095
XspI CTAG 3 cut(s) 54, 543, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.