RchiOBHm_Chr2g0139841

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000496
Physical Location & Seq
Forward (+)
57310549 .. 57311318
770 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51034

Sequence Viewer

Length: 474 bp
ATGCTAATGAAAGCAGGAGGTAAAACAAGGATTGAGCTGTTATCTACTTCACCAAAAGCAGATAAAGCCACCGCTCAGCCAGTGACACTTCCTGAAAACATTCCGAAACGAGCACAATTCGTTAAAGAGTATGAACTGCAGTTGTCCATCATAAATGAGATAGCTTCTGCGGCATCCAAGTCCCCATCAAGCTCATCAGCACCTATGTCCAGGATGTCATCACATTTTCCATCACCCCAATCCAGCAAGTCTTCGCCTAGGCTACCATCACCGCAATCTAGGAAGTCATCACCTAAGCTGCCATCACCGCCATCTAGCAAGTCATCGCCTCAGCCTCAGGTTGGGGAAGGCTTATCACCTCAGCAGCAAGTTGGATCAGCATTTGAAGTTAAGGAGGGACTGGATCATGAAAGACAAAAGAAGCAAGAGTTTCTTCTGCAAACCTTTGCCAGACAACACATGCAGGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

157

Amino Acids

17.07

Weight (kDa)

9.94

Isoelectric Point (pI)

98.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 4 cut(s) 72, 170, 272, 308
AclWI GGATC 2 cut(s) 382, 411
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 1 cut(s) 386
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 4 cut(s) 37, 164, 192, 298
AluI AGCT 4 cut(s) 37, 164, 192, 298
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 2 cut(s) 382, 411
ApeKI GCWGC 2 cut(s) 298, 364
Asp700I GAANNNNTTC 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 257
AsuHPI GGTGA 6 cut(s) 42, 225, 261, 282, 297, 348
AvrII CCTAGG 1 cut(s) 257
AxyI CCTNAGG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 115
BbvCI CCTCAGC 2 cut(s) 330, 360
BbvI GCAGC 2 cut(s) 285, 376
BccI CCATC 6 cut(s) 155, 193, 238, 274, 310, 319
BciT130I CCWGG 1 cut(s) 211
BfaI CTAG 3 cut(s) 258, 279, 315
BfmI CTRYAG 1 cut(s) 137
BisI GCNGC 3 cut(s) 171, 299, 365
BlnI CCTAGG 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 3 cut(s) 172, 300, 366
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 243
Bpu10I CCTNAGC 3 cut(s) 294, 330, 360
Bpu1102I GCTNAGC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 80, 405
Bse21I CCTNAGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 2 cut(s) 173, 219
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 4 cut(s) 89, 344, 350, 374
BseNI ACTGG 2 cut(s) 80, 405
BseXI GCAGC 2 cut(s) 285, 376
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 2 cut(s) 166, 411
BslI CCNNNNNNNGG 1 cut(s) 341
BsmFI GGGAC 2 cut(s) 166, 411
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 374, 403
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 4 cut(s) 72, 170, 272, 308
BspCNI CTCAG 4 cut(s) 88, 343, 349, 373
BspHI TCATGA 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 141
BspPI GGATC 2 cut(s) 382, 411
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 80, 405
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 374, 403
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 211
BstDEI CTNAG 5 cut(s) 75, 294, 330, 336, 360
BstF5I GGATG 2 cut(s) 173, 219
BstKTI GATC 2 cut(s) 377, 406
BstMBI GATC 2 cut(s) 374, 403
BstMWI GCNNNNNNNGC 3 cut(s) 65, 170, 307
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 285, 376
BstV2I GAAGAC 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 173, 219
BtsIMutI CAGTG 1 cut(s) 87
CciI TCATGA 1 cut(s) 406
CviAII CATG 3 cut(s) 407, 460, 471
CviJI RGCY 9 cut(s) 37, 68, 79, 164, 192, 262, 298, 334, 351
CviKI_1 RGCY 9 cut(s) 37, 68, 79, 164, 192, 262, 298, 334, 351
DdeI CTNAG 5 cut(s) 75, 294, 330, 336, 360
DpnI GATC 2 cut(s) 376, 405
DpnII GATC 2 cut(s) 374, 403
Eco130I CCWWGG 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 3 cut(s) 410, 463, 474
FaiI YATR 6 cut(s) 132, 152, 206, 408, 461, 472
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 2 cut(s) 166, 411
FatI CATG 3 cut(s) 406, 459, 470
Fnu4HI GCNGC 3 cut(s) 171, 299, 365
FokI GGATG 2 cut(s) 160, 226
Fsp4HI GCNGC 3 cut(s) 171, 299, 365
FspBI CTAG 3 cut(s) 258, 279, 315
GluI GCNGC 3 cut(s) 171, 299, 365
Hin1II CATG 3 cut(s) 410, 463, 474
HphI GGTGA 6 cut(s) 42, 225, 261, 282, 297, 348
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 92, 407
HpyAV CCTTC 1 cut(s) 341
HpyCH4V TGCA 3 cut(s) 139, 439, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 170, 307
HpyF3I CTNAG 5 cut(s) 75, 294, 330, 336, 360
Hsp92II CATG 3 cut(s) 410, 463, 474
Kzo9I GATC 2 cut(s) 374, 403
LpnPI CCDG 9 cut(s) 93, 105, 196, 223, 256, 323, 386, 449, 463
Lsp1109I GCAGC 2 cut(s) 285, 376
LweI GCATC 1 cut(s) 182
MaeI CTAG 3 cut(s) 258, 279, 315
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 376, 405
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 374, 403
MboII GAAGA 2 cut(s) 243, 425
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 5 cut(s) 11, 339, 345, 369, 388
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 123, 390
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 3 cut(s) 65, 170, 307
NdeII GATC 2 cut(s) 374, 403
NlaIII CATG 3 cut(s) 410, 463, 474
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 463
PagI TCATGA 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 3 cut(s) 172, 300, 366
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PstI CTGCAG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 123, 390
SatI GCNGC 3 cut(s) 171, 299, 365
Sau3AI GATC 2 cut(s) 374, 403
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 116
SsiI CCGC 4 cut(s) 72, 170, 272, 308
SspMI CTAG 3 cut(s) 258, 279, 315
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 257
TasI AATT 1 cut(s) 116
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 123, 390
Tru9I TTAA 2 cut(s) 123, 390
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 298, 364
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 23, 147, 423
TspRI CASTG 1 cut(s) 87
XceI RCATGY 1 cut(s) 463
XmaJI CCTAGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 3 cut(s) 258, 279, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.