RLG00000019834

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000496
Physical Location & Seq
Forward (+)
57293983 .. 57296607
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019834

Sequence Viewer

Length: 606 bp
ATGGCTAAACCAGCTTTTCAGATCGTAACAAAAGCTGGAGAGACGGTATTCCACTTGGCTGTGAAATATGGGTGTTATGATGATATGGATTTCTTTGACTGTAGAGACCATTATAATAACACTATCCTACATCTTGCAGTTTCTAAAGCACAACATAAGATAGCAGAGTACTTAATCAACAAAAAGAAAGTAGAGCTCAATTCTCGAGACTATGAAGCCATGCTAATGAAAGCAGGAGGTAAAAGAAGGATTGAGCTGTTATCTACTTCACCAAAAGCAGATAAAGCCATTGCTCAGTTAGTGACATTCCCAGAAAACATTCCGAAACGAGCACAATTCGTTAAAGAGTATGAACTGCACTTGTCCACCATAAATGAAATATCTTCTGCGGCATTAAAGTCCCCATCAAGCTCATCAGCACCTATGTCCAGGATGTCATCACCTTTTCCATCAAGTCTTCACCTAAGCTGCCATCACCGCCATCTAGCAAGTCATCACCTCAGTAGCAAGTTGGATCAGCATTTGAAGTTAAGGAGGGACTGGATTATGAAAGACAAAAGAAGCAAGAGTTTCTTCTACGTACCTTTGGTGACGCAGTCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

202

Amino Acids

22.96

Weight (kDa)

9.52

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AciI CCGC 2 cut(s) 389, 478
AclWI GGATC 1 cut(s) 522
AfaI GTAC 2 cut(s) 170, 582
AgsI TTSAA 1 cut(s) 526
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 6 cut(s) 14, 35, 196, 256, 411, 468
AluI AGCT 6 cut(s) 14, 35, 196, 256, 411, 468
Alw21I GWGCWC 2 cut(s) 198, 334
Alw26I GTCTC 3 cut(s) 35, 99, 201
AlwI GGATC 1 cut(s) 522
Ama87I CYCGRG 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 6 cut(s) 261, 432, 452, 467, 488, 601
AvaI CYCGRG 1 cut(s) 204
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 2 cut(s) 198, 334
BbvI GCAGC 1 cut(s) 455
BccI CCATC 4 cut(s) 412, 457, 480, 489
BciT130I CCWGG 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 35, 99, 201
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 2 cut(s) 390, 469
BlsI GCNGC 2 cut(s) 391, 470
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 464
BsaAI YACGTR 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 438
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 308, 514
BseNI ACTGG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 198, 334
BsiHKCI CYCGRG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 385, 551
BsmAI GTCTC 3 cut(s) 35, 99, 201
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 385, 551
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 198, 334
Bsp143I GATC 2 cut(s) 21, 514
BspACI CCGC 2 cut(s) 389, 478
BspCNI CTCAG 2 cut(s) 307, 513
BspPI GGATC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 545
BssMI GATC 2 cut(s) 21, 514
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 46, 101
BstBAI YACGTR 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 294, 464, 500
BstF5I GGATG 1 cut(s) 438
BstKTI GATC 2 cut(s) 24, 517
BstMAI GTCTC 3 cut(s) 35, 99, 201
BstMBI GATC 2 cut(s) 21, 514
BstMWI GCNNNNNNNGC 3 cut(s) 11, 284, 477
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 1 cut(s) 100
BstSNI TACGTA 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 449
BtsCI GGATG 1 cut(s) 438
CseI GACGC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 169, 581
CviAII CATG 1 cut(s) 220
CviQI GTAC 2 cut(s) 169, 581
DdeI CTNAG 3 cut(s) 294, 464, 500
DpnI GATC 2 cut(s) 23, 516
DpnII GATC 2 cut(s) 21, 514
Ecl136II GAGCTC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 223
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 2 cut(s) 385, 551
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 390, 469
FokI GGATG 1 cut(s) 445
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 390, 469
FspBI CTAG 1 cut(s) 485
GluI GCNGC 2 cut(s) 390, 469
GsuI CTGGAG 1 cut(s) 57
HgaI GACGC 1 cut(s) 601
Hin1II CATG 1 cut(s) 223
HphI GGTGA 6 cut(s) 261, 432, 452, 467, 488, 601
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 21, 324, 601
Hpy188III TCNNGA 2 cut(s) 204, 206
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 46, 101
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 2 cut(s) 137, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 284, 477
HpyF3I CTNAG 3 cut(s) 294, 464, 500
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 2 cut(s) 21, 514
LpnPI CCDG 7 cut(s) 21, 24, 219, 324, 415, 442, 526
Lsp1109I GCAGC 1 cut(s) 455
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 3 cut(s) 25, 301, 589
MalI GATC 2 cut(s) 23, 516
MboI GATC 2 cut(s) 21, 514
MboII GAAGA 3 cut(s) 375, 449, 565
MhlI GDGCHC 2 cut(s) 198, 334
MluCI AATT 2 cut(s) 199, 335
MmeI TCCRAC 2 cut(s) 492, 579
MnlI CCTC 3 cut(s) 230, 509, 528
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 4 cut(s) 173, 342, 395, 530
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 3 cut(s) 11, 284, 477
NdeII GATC 2 cut(s) 21, 514
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 301, 589
PaeR7I CTCGAG 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 318
PflFI GACNNNGTC 1 cut(s) 595
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 2 cut(s) 391, 470
Ppu21I YACGTR 1 cut(s) 580
PsiI TTATAA 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 595
RsaI GTAC 2 cut(s) 170, 582
RsaNI GTAC 2 cut(s) 169, 581
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 173, 342, 395, 530
SatI GCNGC 2 cut(s) 390, 469
Sau3AI GATC 2 cut(s) 21, 514
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 2 cut(s) 198, 334
SfcI CTRYAG 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 580
Sse9I AATT 2 cut(s) 199, 335
SsiI CCGC 2 cut(s) 389, 478
SspMI CTAG 1 cut(s) 485
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 46, 101
TaiI ACGT 1 cut(s) 582
TaqI TCGA 1 cut(s) 205
TasI AATT 2 cut(s) 199, 335
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 392
Tru1I TTAA 4 cut(s) 173, 342, 395, 530
Tru9I TTAA 4 cut(s) 173, 342, 395, 530
TseFI GTSAC 2 cut(s) 301, 589
TseI GCWGC 1 cut(s) 468
Tsp45I GTSAC 2 cut(s) 301, 589
TspDTI ATGAA 5 cut(s) 228, 242, 366, 390, 563
Tth111I GACNNNGTC 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.