RLG00000019835

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000496
Physical Location & Seq
Forward (+)
57301848 .. 57302423
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019835

Sequence Viewer

Length: 576 bp
ATGGACGCAGAGGCACTACAGAATGCCAGAAACACCATAACACTAGTTGCCATTTTGATCGCAACGATTACTTTTGCTGCTGACATTAGTCCCCCAGGTGGTGTTTACGAAGACGGACTTTTGAAAGGGAAGTCGATAGCAGGAACAACAACTGCTTTCAAGGTGGTTGAAATAAGCAATCACATTGCACTATTCACTTCACTCGTGATAGTCGTTGTTCTTGTCAGTATCATTCCATATCGGAGAAAGCCATTGATAAGATTGTTGAGGGTTGCTCATAAGGTAATGTGGGTACGTGTGGCATTCATGGCGACAGAGTATGTTGCAGCCACTTGGGTTATCATGCTACAAAGTCAGAAAAACGAATTGTTGTTTGTAGCCATTTTTACCATAAGCATTGGAATTCTGGGAACAGTTTTCATTTGGCTAGGTGTTATGCTAATTGTTCATTGCCTGCGAAAGTCGAAGTGGAGGAAGGGAAGAAGAGAAATCCGGGAGGCTGATGAGGACCCTGAGATGAGAAGCCAAAACTCAGATGTTGATAGCACATACAATCAAGGATATCATTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

192

Amino Acids

21.44

Weight (kDa)

9.44

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 4 - 113 4.8e-27 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 3 cut(s) 124, 160, 170
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 77, 326
ApoI RAATTY 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 508
BauI CACGAG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 64, 338
BciT130I CCWGG 1 cut(s) 96
BcnI CCSGG 1 cut(s) 494
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 2 cut(s) 44, 428
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 2 cut(s) 78, 327
BlsI GCNGC 2 cut(s) 79, 328
Bme1390I CCNGG 2 cut(s) 96, 494
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 96, 494
BoxI GACNNNNGTC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpuMI CCSGG 1 cut(s) 494
BsaAI YACGTR 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse3DI GCAATG 2 cut(s) 183, 448
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 2 cut(s) 183, 448
BseMII CTCAG 2 cut(s) 504, 546
BseXI GCAGC 2 cut(s) 64, 338
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 2 cut(s) 28, 302
Bsp143I GATC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 505, 545
BspLI GGNNCC 1 cut(s) 510
BsrDI GCAATG 2 cut(s) 183, 448
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 478
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 2 cut(s) 513, 532
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 96
BstPAI GACNNNNGTC 1 cut(s) 87
BstSCI CCNGG 2 cut(s) 94, 492
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 64, 338
BstV2I GAAGAC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 307, 343
CviJI RGCY 6 cut(s) 250, 329, 380, 427, 500, 525
CviKI_1 RGCY 6 cut(s) 250, 329, 380, 427, 500, 525
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 513, 532
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 563
FaeI CATG 2 cut(s) 310, 346
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 1 cut(s) 75
FatI CATG 2 cut(s) 306, 342
Fnu4HI GCNGC 2 cut(s) 78, 327
Fsp4HI GCNGC 2 cut(s) 78, 327
FspBI CTAG 2 cut(s) 44, 428
GluI GCNGC 2 cut(s) 78, 327
HapII CCGG 1 cut(s) 493
HgaI GACGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 310, 346
HpaII CCGG 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 243, 357, 535
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 188, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 513, 532
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 310, 346
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 40, 81, 108, 126, 392, 467, 506, 525
Lsp1109I GCAGC 2 cut(s) 64, 338
MaeI CTAG 2 cut(s) 44, 428
MaeII ACGT 1 cut(s) 295
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 3 cut(s) 122, 492, 495
MluCI AATT 3 cut(s) 365, 402, 441
MnlI CCTC 5 cut(s) 4, 261, 465, 490, 499
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 2 cut(s) 96, 494
Mva1269I GAATGC 2 cut(s) 28, 302
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 494
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 310, 346
NlaIV GGNNCC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 2 cut(s) 28, 302
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 2 cut(s) 79, 328
Ppu21I YACGTR 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 508
PshAI GACNNNNGTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 1 cut(s) 508
PspPPI RGGWCCY 1 cut(s) 508
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SatI GCNGC 2 cut(s) 78, 327
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 508
ScrFI CCNGG 2 cut(s) 96, 494
SetI ASST 5 cut(s) 100, 165, 285, 298, 433
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 508
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 3 cut(s) 365, 402, 441
SspMI CTAG 2 cut(s) 44, 428
StyD4I CCNGG 2 cut(s) 94, 492
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 134, 464
TasI AATT 3 cut(s) 365, 402, 441
TseI GCWGC 2 cut(s) 77, 326
TspDTI ATGAA 4 cut(s) 295, 409, 437, 558
TspGWI ACGGA 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 1 cut(s) 402
XspI CTAG 2 cut(s) 44, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.