Rh2AG410500

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000496
Physical Location & Seq
Forward (+)
60910825 .. 60911811
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG410500.1

Sequence Viewer

Length: 987 bp
ATGGAGATTAATTCACGGAACAGCAAAGGACTTACTGCATTTGACATCCTCAGTCAGGCAAAAGACAGTGTAGAGGCTCGTCATCTTCAGACAATATTCCATAAAGCCGGTGGTGAAAGATGCACTAATGTGACAAGTACTTGTTCACCAGAAACATCATCTTCATGGCAGAGTTACATATTAGAATCAGACATGTCTATTACAAATGAAAATGCTTTACCCTCTTTGCAAGAAATAACCTGCACTCAGCCAGACAACCAATACAAGTCAAGACAGTCATCGGAACTCCACAATCAAGTTCAAGGGAGATTTGACAAGGCAGCATACAAACTAAAGTCCTCTCCCTCAACCAACTCACATCATCAACGCAGCAAGTCTTCGAGCAAAAGGCACTGCAAAGATCATAAGCAGCATAAGATGTACAGAGAGGCGATACAGAATGCGAGGAACACCATAACACTAGTTGCCATTTTAATTGCAACAGTTACTTTTACTGCTGGAATTACCCCTCCAGGTGGTGTCTATCAGGATGGAGCAATGAAAGGGAAGTCGATAGCAGGCACAACAACATCTTTCAAGGTGTTTGCAATAAGCAATGACATTGCTCTCTTCTCATCACTGTCAATAGTTGTTGTTCTTGTTAGTATCATACCTTTCAGACGAAAACCGCAGATGAATCTCTTGGTGTTTGCCCACAAGGTCATGTGGGTAGCTGTGGCTTTCATGGCAACAGGTTATGTTGCAGCCACATGGGTGATCATGCCGAGAAATCACGGGACTGCTTTTGTGTTTGTGGCTCTACTGTCTGTCAGTGGTGGCACTCTAGGAACAATTTTCATTGGTTTGGGAGTGATGCTTGTGGGTCATTGGCTAAGAAAGTTGAATTGGAGGAAACTGAAAAGGGGAATCTGGGGAGGTGCAGATGAAATTGAAAGCCAAAATTCTGATGTTGAGAGCTCATTCCATCAAGGCTATCACTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

328

Amino Acids

36.26

Weight (kDa)

9.65

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 143 - 252 1.3e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AciI CCGC 1 cut(s) 668
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 139, 422
AfiI CCNNNNNNNGG 2 cut(s) 55, 515
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 4 cut(s) 302, 577, 883, 932
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
AleI CACNNNNGTG 2 cut(s) 128, 752
AluBI AGCT 2 cut(s) 713, 957
AluI AGCT 2 cut(s) 713, 957
Alw21I GWGCWC 1 cut(s) 959
ApeKI GCWGC 4 cut(s) 320, 369, 409, 743
ApoI RAATTY 1 cut(s) 940
AseI ATTAAT 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 125, 138, 766
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 959
BbvI GCAGC 4 cut(s) 332, 381, 421, 755
BccI CCATC 2 cut(s) 524, 972
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 756
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 2 cut(s) 461, 824
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 4 cut(s) 321, 370, 410, 744
BlsI GCNGC 4 cut(s) 322, 371, 411, 745
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 110, 843
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 515
Bse118I RCCGGY 1 cut(s) 107
Bse3DI GCAATG 3 cut(s) 543, 600, 601
BseBI CCWGG 1 cut(s) 513
BseGI GGATG 2 cut(s) 45, 535
BseLI CCNNNNNNNGG 2 cut(s) 55, 515
BseMI GCAATG 3 cut(s) 543, 600, 601
BseMII CTCAG 2 cut(s) 64, 260
BseXI GCAGC 4 cut(s) 332, 381, 421, 755
BsgI GTGCAG 2 cut(s) 226, 939
BsiHKAI GWGCWC 1 cut(s) 959
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 2 cut(s) 55, 515
BsmFI GGGAC 1 cut(s) 790
BsmI GAATGC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 959
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 2 cut(s) 400, 756
BspACI CCGC 1 cut(s) 668
BspCNI CTCAG 2 cut(s) 63, 259
BspMI ACCTGC 1 cut(s) 248
BsrDI GCAATG 3 cut(s) 543, 600, 601
BsrFI RCCGGY 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 2 cut(s) 400, 756
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 5 cut(s) 68, 276, 484, 621, 804
Bst6I CTCTTC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 3 cut(s) 50, 246, 872
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 45, 535
BstKTI GATC 2 cut(s) 403, 759
BstMBI GATC 2 cut(s) 400, 756
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 332, 381, 421, 755
BstV2I GAAGAC 1 cut(s) 369
BtsCI GGATG 2 cut(s) 45, 535
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 4 cut(s) 73, 391, 617, 817
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 107
Csp6I GTAC 2 cut(s) 138, 421
CviAII CATG 6 cut(s) 165, 193, 703, 724, 750, 760
CviQI GTAC 2 cut(s) 138, 421
DdeI CTNAG 3 cut(s) 50, 246, 872
DpnI GATC 2 cut(s) 402, 758
DpnII GATC 2 cut(s) 400, 756
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Ecl136II GAGCTC 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 959
Eco53kI GAGCTC 1 cut(s) 957
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 957
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 959
FaeI CATG 6 cut(s) 168, 196, 706, 727, 753, 763
FaqI GGGAC 1 cut(s) 790
FatI CATG 6 cut(s) 164, 192, 702, 723, 749, 759
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 4 cut(s) 321, 370, 410, 744
FokI GGATG 2 cut(s) 32, 542
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 4 cut(s) 321, 370, 410, 744
FspBI CTAG 2 cut(s) 461, 824
GluI GCNGC 4 cut(s) 321, 370, 410, 744
GsuI CTGGAG 1 cut(s) 495
HapII CCGG 1 cut(s) 108
Hin1II CATG 6 cut(s) 168, 196, 706, 727, 753, 763
HinfI GANTC 3 cut(s) 185, 676, 906
HpaII CCGG 1 cut(s) 108
HphI GGTGA 3 cut(s) 125, 138, 766
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 5 cut(s) 90, 190, 283, 659, 946
Hpy188III TCNNGA 2 cut(s) 270, 527
Hpy8I GTNNAC 1 cut(s) 146
HpyCH4III ACNGT 5 cut(s) 68, 276, 484, 621, 804
HpyCH4V TGCA 9 cut(s) 38, 123, 229, 243, 396, 479, 587, 743, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 3 cut(s) 50, 246, 872
Hsp92II CATG 6 cut(s) 168, 196, 706, 727, 753, 763
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 2 cut(s) 400, 756
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 4 cut(s) 332, 381, 421, 755
LweI GCATC 2 cut(s) 110, 843
MaeI CTAG 2 cut(s) 461, 824
MaeIII GTNAC 3 cut(s) 130, 173, 484
MalI GATC 2 cut(s) 402, 758
MboI GATC 2 cut(s) 400, 756
MboII GAAGA 4 cut(s) 77, 153, 369, 601
MhlI GDGCHC 1 cut(s) 959
MluCI AATT 7 cut(s) 10, 474, 501, 831, 883, 927, 940
MseI TTAA 2 cut(s) 9, 473
MslI CAYNNNNRTG 3 cut(s) 128, 163, 752
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 513
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 2 cut(s) 400, 756
NlaIII CATG 6 cut(s) 168, 196, 706, 727, 753, 763
NmeAIII GCCGAG 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 196
OliI CACNNNNGTG 2 cut(s) 128, 752
PciI ACATGT 1 cut(s) 192
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 185, 676, 906
PkrI GCNGC 4 cut(s) 322, 371, 411, 745
PscI ACATGT 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 959
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
RsaI GTAC 2 cut(s) 139, 422
RsaNI GTAC 2 cut(s) 138, 421
RseI CAYNNNNRTG 3 cut(s) 128, 163, 752
SacI GAGCTC 1 cut(s) 959
SaqAI TTAA 2 cut(s) 9, 473
SatI GCNGC 4 cut(s) 321, 370, 410, 744
Sau3AI GATC 2 cut(s) 400, 756
ScaI AGTACT 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 1 cut(s) 959
SetI ASST 9 cut(s) 242, 517, 582, 655, 702, 715, 736, 919, 959
SfaNI GCATC 2 cut(s) 110, 843
SmiMI CAYNNNNRTG 3 cut(s) 128, 163, 752
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 7 cut(s) 10, 474, 501, 831, 883, 927, 940
SsiI CCGC 1 cut(s) 668
SspI AATATT 1 cut(s) 96
SspMI CTAG 2 cut(s) 461, 824
SstI GAGCTC 1 cut(s) 959
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 5 cut(s) 68, 276, 484, 621, 804
TaqI TCGA 2 cut(s) 380, 551
TasI AATT 7 cut(s) 10, 474, 501, 831, 883, 927, 940
TatI WGTACW 2 cut(s) 137, 420
TfiI GAWTC 3 cut(s) 185, 676, 906
Tru1I TTAA 2 cut(s) 9, 473
Tru9I TTAA 2 cut(s) 9, 473
TscAI CASTG 4 cut(s) 73, 398, 624, 817
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 320, 369, 409, 743
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 7 cut(s) 153, 222, 554, 689, 712, 826, 939
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 4 cut(s) 73, 398, 624, 817
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 940
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XspI CTAG 2 cut(s) 461, 824
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.