AT3G52830

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000496
Physical Location & Seq
Forward (+)
19578005 .. 19578265
261 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52830.1

Sequence Viewer

Length: 261 bp
ATGCCGTTTCGAGCTGGTGGTTCTGGCGAGCTGGCTCTTCTTGCTAAGTTGGCTTGTCTTGACGGGATGTCTTCTCTCTACGAGCTGACTTGTATCGATGAGCGGACTTGTCCTGACGAGCTGAATTGTCTTGACGAGCTGACTTGTCTTGACGAGCTGACTTGTCTTGTCCTTTCTCCAGGTCTCCCAAAAAAAATGTCCTTTCCCGAGACTTTCTATTCCTTATTTATACCCGTCCGTGTAGTAGGGTACGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

86

Amino Acids

9.45

Weight (kDa)

4.45

Isoelectric Point (pI)

66.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 103
AciI CCGC 1 cut(s) 103
AfaI GTAC 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 6 cut(s) 14, 31, 85, 121, 139, 157
AluI AGCT 6 cut(s) 14, 31, 85, 121, 139, 157
Alw26I GTCTC 2 cut(s) 188, 203
Ama87I CYCGRG 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AvaI CYCGRG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 188, 203
Bme1390I CCNGG 1 cut(s) 180
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 162
Bsa29I ATCGAT 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 188
BseBI CCWGG 1 cut(s) 180
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 1 cut(s) 72
BshVI ATCGAT 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 188, 203
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 206
BspACI CCGC 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 29, 33
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 188, 203
BstMWI GCNNNNNNNGC 2 cut(s) 41, 50
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 29, 33
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 8 cut(s) 14, 31, 35, 53, 85, 121, 139, 157
CviKI_1 RGCY 8 cut(s) 14, 31, 35, 53, 85, 121, 139, 157
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 45
DriI GACNNNNNGTC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 178
FaiI YATR 1 cut(s) 230
FokI GGATG 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 162
Hpy188III TCNNGA 5 cut(s) 59, 113, 131, 149, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 50
HpyF3I CTNAG 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 9, 17, 126, 165, 192
MbiI CCGCTC 1 cut(s) 103
MboII GAAGA 2 cut(s) 29, 63
MluCI AATT 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 41, 50
PciSI GCTCTTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 180
SetI ASST 8 cut(s) 16, 33, 87, 123, 141, 159, 184, 260
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 178
TaqI TCGA 2 cut(s) 10, 96
TasI AATT 1 cut(s) 124
TspGWI ACGGA 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.