RchiOBHm_Chr2g0139851

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000496
Physical Location & Seq
Forward (+)
57311486 .. 57311941
456 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51035

Sequence Viewer

Length: 456 bp
ATGAAAGGGAAGTCGATAGCAGGAACAACAACTGCTTTCAAGGTGTTTGAAATAAGCAATTACGTCGCACTATTTACATCACTCTCGATAGTTGTTGTTCTTGTGAGTATCATTCCATATCGGAGAAAGCCATTGATAAGATTGTTGAGGGTTGCTCATAAGGTAATGTGGGTAGCTGTGGCATTCATGGCAACAGGGTATGTTGCAGCCACATGGGTTATCATGCAACAAAATCAGAAAAACAAATTGTTGTTTGTAGCCTTTTTGACTATAAGCATTGGAATTCTGGGAACAGTTTTCATTTGGCTGGGTGTTTTGCTAGTTGTTCATTGCCTGCGAAAGTCGAAGTGGAGGAAGGGAAGAAGAGAGATTGGGGAGGCTGATGAGGATCCTGAAATGGGAAGCCAAAACTCGGATGTTGATAGCACATACAATCAAGGATATCATTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

9.9

Isoelectric Point (pI)

20.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 2 - 73 2.1e-13 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 383, 396
AcsI RAATTY 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 398, 412
AgsI TTSAA 2 cut(s) 40, 50
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwI GGATC 2 cut(s) 383, 396
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 282
BamHI GGATCC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BfaI CTAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BsaBI GATNNNNATC 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 412
Bse3DI GCAATG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 387
BseGI GGATG 1 cut(s) 421
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 398, 412
BseMI GCAATG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 398, 412
BsmI GAATGC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 2 cut(s) 383, 396
BsrDI GCAATG 1 cut(s) 328
BssMI GATC 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 421
BstKTI GATC 1 cut(s) 391
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BtsCI GGATG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 335
CviAII CATG 3 cut(s) 187, 213, 223
CviJI RGCY 7 cut(s) 130, 176, 209, 260, 307, 380, 405
CviKI_1 RGCY 7 cut(s) 130, 176, 209, 260, 307, 380, 405
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco32I GATATC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 282
EcoRV GATATC 1 cut(s) 443
FaeI CATG 3 cut(s) 190, 216, 226
FaiI YATR 9 cut(s) 118, 159, 188, 201, 214, 224, 272, 430, 451
FatI CATG 3 cut(s) 186, 212, 222
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 190, 216, 226
Hpy188I TCNGA 3 cut(s) 123, 237, 415
Hpy188III TCNNGA 2 cut(s) 85, 392
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 206, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 190, 216, 226
Kzo9I GATC 1 cut(s) 388
LpnPI CCDG 6 cut(s) 6, 180, 272, 293, 347, 405
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 2 cut(s) 372, 375
MflI RGATCY 1 cut(s) 388
MluCI AATT 3 cut(s) 58, 245, 282
MnlI CCTC 4 cut(s) 141, 345, 370, 379
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 388
NlaIII CATG 3 cut(s) 190, 216, 226
NlaIV GGNNCC 1 cut(s) 390
PctI GAATGC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 388
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 388
SetI ASST 4 cut(s) 45, 66, 165, 178
Sse9I AATT 3 cut(s) 58, 245, 282
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 14, 86, 344
TasI AATT 3 cut(s) 58, 245, 282
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 5 cut(s) 17, 175, 289, 317, 438
XapI RAATTY 1 cut(s) 282
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.