Rh2DG430100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000496
Physical Location & Seq
Forward (+)
62113509 .. 62114634
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG430100.1

Sequence Viewer

Length: 930 bp
ATGGATCCAAGGCTTTTAGTGTGCATAAGCGGCAACAATATACCTGAATTTATTGGCTTACTTCATGAAAATGAAGGACTTATCGCTCAAAGAACAGCTGATTCCTTCAACACAGTTTTACACCTTGCTTCGAAACTGGGACACATTGACATGGTCCTGGAAATTATTAAGTTATGCCCTGAATTGGTTGCTGCTGAAAACAAGTACCTTGAGACTCCAGTTCATGAAGCTTGTCGCCTTGGAAATGCCAACATCTTGAAGCTGCTATTAGAAGCCAATCCTCAAGCAGCAAGTAAGCTTAATGTTGAGAAAAAGAGTGCTTCTTTTGTAGCTTGCAGTCTGGGTCATCTTGATGCAGTGAATCTCCTATTGGAACAACCTTGGATGGAGGGCTTAGAGGATGTTGGGCTTGATCAAACATGTATTCATGTTGCTGCATCCAACGGACACACAGATATTGTTAGAGAGATACTAAACATCTGCCCTAACTATGCTCAAAAGACTGATGACAATGGGAATTCACCTTTACACTATGCTTGCAACAAAGGGCACAGGGAAATAACCTGGTTACTGCTACAGCGTGATGTCAATCTGGCCTTGCAGTATAACAACAATGGTTATACACCTTTGCACTTGGCAACAATAAATGGAAACATATCAGTCCTTGAAGACTTCGCATTGAAAGCTCCAGCGGCTTTTCATTATCTCACAAAAGAAGAGGAGACAATATTTCATCTGACTGTGAGATACGGCAAATATCAAGCTTTGTTATTCTTGGTGCATGTTGCTAACAGTACTAATCTCCTTCACTGTCAAGATCGATACGGTAACACTATCTTGCACCTTGCAGTTTCTGGAGCTCGTTATGAGGTGAGAAATGAAATATCAATTTTAACTAAAGCAAATAAATCAAGAGGTGATCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

309

Amino Acids

34.39

Weight (kDa)

5.95

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 93 4.9e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 67 - 125 4.2e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 110 - 197 6e-16 Ankyrin repeats (3 copies)
Ank_2 PF12796 142 - 222 3.4e-17 Ankyrin repeats (3 copies)
Ank_4 PF13637 142 - 189 3e-06 Ankyrin repeats (many copies)
Ank PF00023 171 - 197 5e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 692
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 47, 517
AfaI GTAC 2 cut(s) 206, 796
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 4 cut(s) 109, 259, 668, 682
AjnI CCWGG 2 cut(s) 156, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 8 cut(s) 98, 230, 262, 298, 332, 686, 764, 860
AluI AGCT 8 cut(s) 98, 230, 262, 298, 332, 686, 764, 860
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 2 cut(s) 206, 716
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 1 cut(s) 594
ApeKI GCWGC 4 cut(s) 191, 262, 287, 434
ApoI RAATTY 2 cut(s) 47, 517
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 513, 883, 929
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 552
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 4 cut(s) 178, 249, 299, 421
BccI CCATC 1 cut(s) 379
BceAI ACGGC 1 cut(s) 766
BciT130I CCWGG 2 cut(s) 158, 565
BclI TGATCA 2 cut(s) 412, 919
BcoDI GTCTC 2 cut(s) 206, 716
BfmI CTRYAG 1 cut(s) 575
BisI GCNGC 6 cut(s) 31, 192, 263, 288, 435, 693
BlsI GCNGC 6 cut(s) 32, 193, 264, 289, 436, 694
BmcAI AGTACT 1 cut(s) 796
Bme1390I CCNGG 2 cut(s) 158, 565
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 158, 565
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 343, 446
BmuI ACTGGG 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 675
BpmI CTGGAG 3 cut(s) 201, 672, 876
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 2 cut(s) 230, 267
Bsa29I ATCGAT 1 cut(s) 820
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 8, 238, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 141, 218
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 2 cut(s) 158, 565
BseCI ATCGAT 1 cut(s) 820
BseDI CCNNGG 3 cut(s) 8, 238, 380
BseGI GGATG 3 cut(s) 390, 406, 437
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 184
BseNI ACTGG 2 cut(s) 141, 218
BseRI GAGGAG 1 cut(s) 734
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 4 cut(s) 178, 249, 299, 421
BshFI GGCC 1 cut(s) 596
BshVI ATCGAT 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 862
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 206, 716
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 1 cut(s) 596
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 552, 862
Bsp143I GATC 4 cut(s) 4, 412, 817, 919
BspACI CCGC 2 cut(s) 30, 692
BspANI GGCC 1 cut(s) 596
BspDI ATCGAT 1 cut(s) 820
BspHI TCATGA 2 cut(s) 64, 223
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 131
BsrI ACTGG 2 cut(s) 141, 218
BssECI CCNNGG 3 cut(s) 8, 238, 380
BssMI GATC 4 cut(s) 4, 412, 817, 919
BssT1I CCWWGG 3 cut(s) 8, 238, 380
Bst2UI CCWGG 2 cut(s) 158, 565
Bst4CI ACNGT 5 cut(s) 115, 742, 794, 812, 827
Bst6I CTCTTC 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 334, 538
BstDEI CTNAG 1 cut(s) 394
BstF5I GGATG 3 cut(s) 390, 406, 437
BstKTI GATC 4 cut(s) 7, 415, 820, 922
BstMAI GTCTC 2 cut(s) 206, 716
BstMBI GATC 4 cut(s) 4, 412, 817, 919
BstMWI GCNNNNNNNGC 3 cut(s) 30, 683, 692
BstNI CCWGG 2 cut(s) 158, 565
BstNSI RCATGY 2 cut(s) 423, 785
BstSCI CCNGG 2 cut(s) 156, 563
BstSFI CTRYAG 1 cut(s) 575
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 178, 249, 299, 421
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 820
BsuRI GGCC 1 cut(s) 596
BsuTUI ATCGAT 1 cut(s) 820
BtsCI GGATG 3 cut(s) 390, 406, 437
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 363, 808
Cac8I GCNNGC 2 cut(s) 334, 538
CaiI CAGNNNCTG 1 cut(s) 854
CciI TCATGA 2 cut(s) 64, 223
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 820
CsiI ACCWGGT 1 cut(s) 563
Csp6I GTAC 2 cut(s) 205, 795
CviAII CATG 6 cut(s) 65, 151, 224, 420, 428, 782
CviQI GTAC 2 cut(s) 205, 795
DdeI CTNAG 1 cut(s) 394
DpnI GATC 4 cut(s) 6, 414, 819, 921
DpnII GATC 4 cut(s) 4, 412, 817, 919
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 860
Eco130I CCWWGG 3 cut(s) 8, 238, 380
Eco24I GRGCYC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 860
EcoICRI GAGCTC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 156, 563
EcoT14I CCWWGG 3 cut(s) 8, 238, 380
EcoT38I GRGCYC 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 8, 238, 380
FaeI CATG 6 cut(s) 68, 154, 227, 423, 431, 785
FaqI GGGAC 1 cut(s) 153
FatI CATG 6 cut(s) 64, 150, 223, 419, 427, 781
FbaI TGATCA 2 cut(s) 412, 919
Fnu4HI GCNGC 6 cut(s) 31, 192, 263, 288, 435, 693
FokI GGATG 3 cut(s) 397, 413, 424
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 6 cut(s) 31, 192, 263, 288, 435, 693
GluI GCNGC 6 cut(s) 31, 192, 263, 288, 435, 693
GsuI CTGGAG 3 cut(s) 201, 672, 876
HaeIII GGCC 1 cut(s) 596
Hin1II CATG 6 cut(s) 68, 154, 227, 423, 431, 785
HindIII AAGCTT 3 cut(s) 228, 296, 762
HinfI GANTC 3 cut(s) 101, 214, 361
HphI GGTGA 3 cut(s) 513, 883, 929
Hpy188I TCNGA 1 cut(s) 738
Hpy188III TCNNGA 7 cut(s) 65, 224, 256, 350, 815, 855, 912
HpyAV CCTTC 3 cut(s) 68, 115, 815
HpyCH4III ACNGT 5 cut(s) 115, 742, 794, 812, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 683, 692
HpyF3I CTNAG 1 cut(s) 394
Hsp92II CATG 6 cut(s) 68, 154, 227, 423, 431, 785
Ksp22I TGATCA 2 cut(s) 412, 919
Kzo9I GATC 4 cut(s) 4, 412, 817, 919
LmnI GCTCC 2 cut(s) 691, 857
Lsp1109I GCAGC 4 cut(s) 178, 249, 299, 421
LweI GCATC 2 cut(s) 343, 446
MabI ACCWGGT 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 567, 827
MalI GATC 4 cut(s) 6, 414, 819, 921
MboI GATC 4 cut(s) 4, 412, 817, 919
MboII GAAGA 2 cut(s) 680, 728
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 552, 862
MluCI AATT 5 cut(s) 47, 162, 182, 517, 888
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 6 cut(s) 291, 382, 391, 712, 862, 908
MseI TTAA 3 cut(s) 168, 300, 893
MslI CAYNNNNRTG 3 cut(s) 69, 149, 351
MspA1I CMGCKG 2 cut(s) 98, 692
MspR9I CCNGG 2 cut(s) 158, 565
MvaI CCWGG 2 cut(s) 158, 565
MwoI GCNNNNNNNGC 3 cut(s) 30, 683, 692
NdeII GATC 4 cut(s) 4, 412, 817, 919
NlaIII CATG 6 cut(s) 68, 154, 227, 423, 431, 785
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 423, 785
NspV TTCGAA 1 cut(s) 131
PagI TCATGA 2 cut(s) 64, 223
PciI ACATGT 1 cut(s) 419
PfeI GAWTC 2 cut(s) 101, 361
PflFI GACNNNGTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 6 cut(s) 32, 193, 264, 289, 436, 694
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 862
Psp6I CCWGG 2 cut(s) 156, 563
PspGI CCWGG 2 cut(s) 156, 563
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 206, 796
RsaNI GTAC 2 cut(s) 205, 795
RseI CAYNNNNRTG 3 cut(s) 69, 149, 351
SacI GAGCTC 1 cut(s) 862
SaqAI TTAA 3 cut(s) 168, 300, 893
SatI GCNGC 6 cut(s) 31, 192, 263, 288, 435, 693
Sau3AI GATC 4 cut(s) 4, 412, 817, 919
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 796
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 158, 565
SduI GDGCHC 2 cut(s) 552, 862
SexAI ACCWGGT 1 cut(s) 563
SfaNI GCATC 2 cut(s) 343, 446
SfcI CTRYAG 1 cut(s) 575
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 3 cut(s) 69, 149, 351
SmlI CTYRAG 2 cut(s) 209, 282
SmoI CTYRAG 2 cut(s) 209, 282
Sse9I AATT 5 cut(s) 47, 162, 182, 517, 888
SsiI CCGC 2 cut(s) 30, 692
SspI AATATT 1 cut(s) 729
SstI GAGCTC 1 cut(s) 862
StyD4I CCNGG 2 cut(s) 156, 563
StyI CCWWGG 3 cut(s) 8, 238, 380
TaaI ACNGT 5 cut(s) 115, 742, 794, 812, 827
TaqI TCGA 2 cut(s) 131, 820
TasI AATT 5 cut(s) 47, 162, 182, 517, 888
TatI WGTACW 1 cut(s) 794
TauI GCSGC 2 cut(s) 33, 695
TfiI GAWTC 2 cut(s) 101, 361
Tru1I TTAA 3 cut(s) 168, 300, 893
Tru9I TTAA 3 cut(s) 168, 300, 893
TscAI CASTG 2 cut(s) 363, 815
TseI GCWGC 4 cut(s) 191, 262, 287, 434
TspDTI ATGAA 9 cut(s) 53, 81, 87, 212, 240, 416, 689, 722, 894
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 2 cut(s) 363, 815
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 2 cut(s) 47, 517
XceI RCATGY 2 cut(s) 423, 785
ZrmI AGTACT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.