Rh2AG410000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000496
Physical Location & Seq
Forward (+)
60871709 .. 60873338
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG410000.1

Sequence Viewer

Length: 780 bp
ATGGAAGGGAAACTATCCAAAGAAAAAAGGGAGATAACCTGGACACTCCTCAAGCTTGATCCAAATCCTGCTCAGCAGCACAATCTCAGTGGTCACACACCCTTGCACTTGGCAGCAATAGACTACAAAGTCTCAGTCCTTCAAGTGTTCGTCTCAATGGCTAAACCAGCTTTTCAGATCGTAACAAAAGCCGGAGAGACGATAGCAGAGTACCTAATCAGCAAAAAGAAAGTAGAGCTCAATTCTCGAAACTATGAAGGACTCACAGCCCTTGACCTGCTCAAACAGAGCAAGGAAAGTGTAGACAATCAACATCTTGAAGCCATGCTAATGAAAGCAGGAGGTAAAACAAGGATTGAGCTGTTATCTACTTCACCAAAAGCAGATAAAGCCACTGCTAAGCCAGTGACACTTCCTGAAAACATTCCGAAACGAGCACAATTCGTTAAAGAGTATGAACTGCAGTTATCCATCATAAATGAAATAGCTTCTGCTGCATCCAAGTCCCCATCAAGCTCATTAGCACCTATGTCCAGGATGTCATCACCTTTTCCATCACCCCAATCCAGCAAGTCTTCGCCTAAGCTGCCATCACCGCAATCTAGCAAGTCATTGCCTAAGCTGCCATCACCGCCATCTAGCAAGTCATCGCCTCAGTCTCAGGTTGGGGAAGGCTCATCATCTCAGCAGCGAGTTGGATTAGCATTTGAAGTTAAAGAGGGACTGGATTATGAAAGACAAAAGAAGCAAGAGTTTCTTCTGCAAACCTTTGCGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

259

Amino Acids

28.4

Weight (kDa)

9.64

Isoelectric Point (pI)

66.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 303
AciI CCGC 2 cut(s) 596, 632
AclWI GGATC 1 cut(s) 53
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 3 cut(s) 143, 320, 710
AjnI CCWGG 2 cut(s) 38, 533
AluBI AGCT 8 cut(s) 55, 170, 238, 361, 488, 516, 586, 622
AluI AGCT 8 cut(s) 55, 170, 238, 361, 488, 516, 586, 622
Alw21I GWGCWC 2 cut(s) 240, 439
Alw26I GTCTC 4 cut(s) 136, 157, 191, 663
AlwI GGATC 1 cut(s) 53
ApeKI GCWGC 6 cut(s) 76, 113, 494, 586, 622, 688
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 423
AsuHPI GGTGA 5 cut(s) 366, 537, 549, 585, 621
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 240, 439
BbvI GCAGC 6 cut(s) 88, 125, 481, 573, 609, 700
BccI CCATC 6 cut(s) 479, 517, 562, 598, 634, 643
BciT130I CCWGG 2 cut(s) 40, 535
BcoDI GTCTC 4 cut(s) 136, 157, 191, 663
BfaI CTAG 2 cut(s) 603, 639
BfmI CTRYAG 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 6 cut(s) 77, 114, 495, 587, 623, 689
BlpI GCTNAGC 2 cut(s) 72, 399
BlsI GCNGC 6 cut(s) 78, 115, 496, 588, 624, 690
Bme1390I CCNGG 2 cut(s) 40, 535
BmrFI CCNGG 2 cut(s) 40, 535
BmsI GCATC 1 cut(s) 506
BpiI GAAGAC 1 cut(s) 567
Bpu10I CCTNAGC 2 cut(s) 582, 618
Bpu1102I GCTNAGC 2 cut(s) 72, 399
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 404, 729
Bse3DI GCAATG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 40, 535
BseGI GGATG 2 cut(s) 497, 543
BseJI GATNNNNATC 1 cut(s) 63
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 6 cut(s) 86, 100, 147, 668, 674, 698
BseNI ACTGG 2 cut(s) 404, 729
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 6 cut(s) 88, 125, 481, 573, 609, 700
BsiHKAI GWGCWC 2 cut(s) 240, 439
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 490, 735
BsmAI GTCTC 4 cut(s) 136, 157, 191, 663
BsmBI CGTCTC 2 cut(s) 157, 191
BsmFI GGGAC 2 cut(s) 490, 735
Bsp1286I GDGCHC 2 cut(s) 240, 439
Bsp143I GATC 2 cut(s) 58, 177
Bsp1720I GCTNAGC 2 cut(s) 72, 399
BspACI CCGC 2 cut(s) 596, 632
BspCNI CTCAG 6 cut(s) 85, 99, 146, 667, 673, 697
BspMAI CTGCAG 1 cut(s) 465
BspMI ACCTGC 1 cut(s) 285
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 611
BsrI ACTGG 2 cut(s) 404, 729
BssMI GATC 2 cut(s) 58, 177
Bst2UI CCWGG 2 cut(s) 40, 535
BstDEI CTNAG 9 cut(s) 72, 86, 133, 399, 582, 618, 654, 660, 684
BstF5I GGATG 2 cut(s) 497, 543
BstKTI GATC 2 cut(s) 61, 180
BstMAI GTCTC 4 cut(s) 136, 157, 191, 663
BstMBI GATC 2 cut(s) 58, 177
BstMWI GCNNNNNNNGC 7 cut(s) 167, 389, 494, 586, 595, 622, 631
BstNI CCWGG 2 cut(s) 40, 535
BstSCI CCNGG 2 cut(s) 38, 533
BstSFI CTRYAG 1 cut(s) 461
BstV1I GCAGC 6 cut(s) 88, 125, 481, 573, 609, 700
BstV2I GAAGAC 1 cut(s) 567
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 2 cut(s) 497, 543
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 94, 393, 411
BveI ACCTGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 1 cut(s) 325
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 9 cut(s) 72, 86, 133, 399, 582, 618, 654, 660, 684
DpnI GATC 2 cut(s) 60, 179
DpnII GATC 2 cut(s) 58, 177
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 38, 533
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 157, 191
FaeI CATG 1 cut(s) 328
FaiI YATR 6 cut(s) 255, 326, 456, 476, 530, 732
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 2 cut(s) 490, 735
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 6 cut(s) 77, 114, 495, 587, 623, 689
FokI GGATG 2 cut(s) 484, 550
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 6 cut(s) 77, 114, 495, 587, 623, 689
FspBI CTAG 2 cut(s) 603, 639
GluI GCNGC 6 cut(s) 77, 114, 495, 587, 623, 689
HapII CCGG 1 cut(s) 192
Hin1II CATG 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 192
HphI GGTGA 5 cut(s) 366, 537, 549, 585, 621
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 177, 429
Hpy188III TCNNGA 3 cut(s) 246, 317, 416
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 149, 251, 665
HpyCH4V TGCA 4 cut(s) 106, 463, 497, 763
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 389, 494, 586, 595, 622, 631
HpyF3I CTNAG 9 cut(s) 72, 86, 133, 399, 582, 618, 654, 660, 684
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 2 cut(s) 58, 177
Lsp1109I GCAGC 6 cut(s) 88, 125, 481, 573, 609, 700
LweI GCATC 1 cut(s) 506
MaeI CTAG 2 cut(s) 603, 639
MaeIII GTNAC 3 cut(s) 92, 181, 406
MalI GATC 2 cut(s) 60, 179
MboI GATC 2 cut(s) 58, 177
MboII GAAGA 2 cut(s) 567, 749
MhlI GDGCHC 2 cut(s) 240, 439
MluCI AATT 2 cut(s) 241, 440
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 4 cut(s) 59, 335, 663, 712
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 2 cut(s) 447, 714
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 40, 535
MvaI CCWGG 2 cut(s) 40, 535
MwoI GCNNNNNNNGC 7 cut(s) 167, 389, 494, 586, 595, 622, 631
NdeII GATC 2 cut(s) 58, 177
NlaIII CATG 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 92, 406
PdmI GAANNNNTTC 1 cut(s) 423
PfoI TCCNGGA 1 cut(s) 533
PkrI GCNGC 6 cut(s) 78, 115, 496, 588, 624, 690
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 38, 533
PspGI CCWGG 2 cut(s) 38, 533
PstI CTGCAG 1 cut(s) 465
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 447, 714
SatI GCNGC 6 cut(s) 77, 114, 495, 587, 623, 689
Sau3AI GATC 2 cut(s) 58, 177
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 40, 535
SduI GDGCHC 2 cut(s) 240, 439
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 241, 440
SsiI CCGC 2 cut(s) 596, 632
SspMI CTAG 2 cut(s) 603, 639
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 38, 533
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 241, 440
Tru1I TTAA 2 cut(s) 447, 714
Tru9I TTAA 2 cut(s) 447, 714
TscAI CASTG 3 cut(s) 94, 400, 411
TseFI GTSAC 2 cut(s) 92, 406
TseI GCWGC 6 cut(s) 76, 113, 494, 586, 622, 688
Tsp45I GTSAC 2 cut(s) 92, 406
TspDTI ATGAA 5 cut(s) 270, 347, 471, 495, 747
TspRI CASTG 3 cut(s) 94, 400, 411
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 2 cut(s) 603, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.