Rh2CG396200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000496
Physical Location & Seq
Forward (+)
53844737 .. 53847114
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG396200.1

Sequence Viewer

Length: 627 bp
ATGCTCTACATTGAGGGTGAAGATGAACCAAGAGAACCCTTTTACTCGATAGCAGAGTACCTAATCAGCAAAAAGAAAGTAGAGCTCAATTCTCGAAACTATGAAGGACTCACAGCCCTTGACCTGCTCAAACAGAGCAAGGAAAGTGTAGACAATCAACATCTTGAAGCCATGCTAATGAAAGCAGGAGGTAAAACAAGGATTGAGCTGTTATCTACTTCACCAAAAGCAGATAAAGCCACTGCTAAGCCAGTGACACTTCCTGAAAACATTCCGAAACGAGCACAATTCGTTAAAGAGTATGAACTGCAGTTATCCATCATAAATGAAATAGCTTCTGCTGCATCCAAGTCCCCATCAAGCTCATTAGCACCTATGTCCAGGATGTCATCACCTTTTCCATCACCCCAATCCAGCAAGTCTTCGCCTAAGCTGCCATCACCGCAATCTAGCAAGTCATTGCCTAAGCTGCCATCACCGCCATCTAGCAAGTCATCGCCTCAGTCTCAGGTTGGGGAAGGCTCATCATCTCAGCAGCGAGTTGGATTAGCATTTGAAGTTAAAGAGGGACTGGATTATGAAAGACAAAAGAAGCAAGAGTTTCTTCTGCAAACCTTTGCGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

208

Amino Acids

22.92

Weight (kDa)

9.24

Isoelectric Point (pI)

84.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 443, 479
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 2 cut(s) 167, 557
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 6 cut(s) 85, 208, 335, 363, 433, 469
AluI AGCT 6 cut(s) 85, 208, 335, 363, 433, 469
Alw21I GWGCWC 2 cut(s) 87, 286
Alw26I GTCTC 1 cut(s) 510
ApeKI GCWGC 4 cut(s) 341, 433, 469, 535
Asp700I GAANNNNTTC 1 cut(s) 270
AsuHPI GGTGA 6 cut(s) 29, 213, 384, 396, 432, 468
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 87, 286
BbvI GCAGC 4 cut(s) 328, 420, 456, 547
BccI CCATC 6 cut(s) 326, 364, 409, 445, 481, 490
BciT130I CCWGG 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 2 cut(s) 450, 486
BfmI CTRYAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 4 cut(s) 342, 434, 470, 536
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 4 cut(s) 343, 435, 471, 537
Bme1390I CCNGG 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 414
Bpu10I CCTNAGC 2 cut(s) 429, 465
Bpu1102I GCTNAGC 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 251, 576
Bse3DI GCAATG 1 cut(s) 458
BseBI CCWGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 344, 390
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 3 cut(s) 515, 521, 545
BseNI ACTGG 2 cut(s) 251, 576
BseXI GCAGC 4 cut(s) 328, 420, 456, 547
BsiHKAI GWGCWC 2 cut(s) 87, 286
BslFI GGGAC 2 cut(s) 337, 582
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 337, 582
Bsp1286I GDGCHC 2 cut(s) 87, 286
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 2 cut(s) 443, 479
BspCNI CTCAG 3 cut(s) 514, 520, 544
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 458
BsrI ACTGG 2 cut(s) 251, 576
Bst2UI CCWGG 1 cut(s) 382
BstDEI CTNAG 6 cut(s) 246, 429, 465, 501, 507, 531
BstF5I GGATG 2 cut(s) 344, 390
BstMAI GTCTC 1 cut(s) 510
BstMWI GCNNNNNNNGC 6 cut(s) 236, 341, 433, 442, 469, 478
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 328, 420, 456, 547
BstV2I GAAGAC 1 cut(s) 414
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 2 cut(s) 344, 390
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 258
BveI ACCTGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 172
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 6 cut(s) 246, 429, 465, 501, 507, 531
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 1 cut(s) 175
FaiI YATR 6 cut(s) 102, 173, 303, 323, 377, 579
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 2 cut(s) 337, 582
FatI CATG 1 cut(s) 171
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 4 cut(s) 342, 434, 470, 536
FokI GGATG 2 cut(s) 331, 397
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 342, 434, 470, 536
FspBI CTAG 2 cut(s) 450, 486
GluI GCNGC 4 cut(s) 342, 434, 470, 536
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 108
HphI GGTGA 6 cut(s) 29, 213, 384, 396, 432, 468
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 3 cut(s) 93, 164, 263
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 98, 512
HpyCH4V TGCA 3 cut(s) 310, 344, 610
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 341, 433, 442, 469, 478
HpyF3I CTNAG 6 cut(s) 246, 429, 465, 501, 507, 531
Hsp92II CATG 1 cut(s) 175
LpnPI CCDG 9 cut(s) 137, 171, 264, 276, 367, 394, 427, 494, 557
Lsp1109I GCAGC 4 cut(s) 328, 420, 456, 547
LweI GCATC 1 cut(s) 353
MaeI CTAG 2 cut(s) 450, 486
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 3 cut(s) 32, 414, 596
MhlI GDGCHC 2 cut(s) 87, 286
MluCI AATT 2 cut(s) 88, 287
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 4 cut(s) 7, 182, 510, 559
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 294, 561
MslI CAYNNNNRTG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 6 cut(s) 236, 341, 433, 442, 469, 478
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 380
PkrI GCNGC 4 cut(s) 343, 435, 471, 537
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PstI CTGCAG 1 cut(s) 312
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 294, 561
SatI GCNGC 4 cut(s) 342, 434, 470, 536
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 2 cut(s) 87, 286
SfaNI GCATC 1 cut(s) 353
SfcI CTRYAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 2 cut(s) 88, 287
SsiI CCGC 2 cut(s) 443, 479
SspMI CTAG 2 cut(s) 450, 486
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 380
TaqI TCGA 2 cut(s) 47, 94
TasI AATT 2 cut(s) 88, 287
Tru1I TTAA 2 cut(s) 294, 561
Tru9I TTAA 2 cut(s) 294, 561
TscAI CASTG 2 cut(s) 247, 258
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 4 cut(s) 341, 433, 469, 535
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 6 cut(s) 39, 117, 194, 318, 342, 594
TspRI CASTG 2 cut(s) 247, 258
XmiI GTMKAC 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 2 cut(s) 450, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.