RLG00000029493

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
39481274 .. 39482448
1175 bp
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UTR
Exon/CDS
Intron
RLM00000029493

Sequence Viewer

Length: 582 bp
ATGCCTAAACCATCTTTTCAGATTGTAACAAAAGCCGGAGTGACAGTATTCCACTTGGCTGTGAAATATGGGCACCGTGATGCTATAGTATACTTGACCTATGTCTGTGATGATATGGATTTCTTTGGCTGTCGAGACCGTTATAGTAATACCATCCTACATCTTGCAGTTTCTGAACCGCAGCATAAGATAGCAGAGTACCTAATCAGCGAAAAAAAAGTGGACCTCAACTCTAGAAACAGTGAAGGACTGACAGCCCTTAACCTCCTCAAACAGAGCAAAGAAAGTGTAGACAATCAGCATCTTGAAGCCATGCTAATGAAAGCAGGAGAGTATGAAATGCAGTTGTCCATCATAAATGAAATAACTTATGCTGCATCCAAATCCCCATCAAGATCATCAGCACCTATGTCCTTGATGTCATCACTGTTTCCATCACCCCAATCCAGCAAGTCTTCACCTAAGCTGCCATCACCGCAATCTAGCAAGTCATCGCCTAAGCTACCATCACCACCATCTAGCAAGTTATCGCCTCAGCTTCAAGTCGGGGAAGGTTCATCACGTCAGCAGCAAGTTGGATAA
Functional Annotation

Protein Analysis

194

Amino Acids

21.21

Weight (kDa)

9.0

Isoelectric Point (pI)

71.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 9 - 80 2e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 44 - 89 8.9e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AccI GTMKAC 2 cut(s) 90, 291
AciI CCGC 2 cut(s) 179, 476
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 2 cut(s) 308, 542
AjiI CACGTC 1 cut(s) 563
AluBI AGCT 3 cut(s) 466, 502, 538
AluI AGCT 3 cut(s) 466, 502, 538
Alw26I GTCTC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 173
ApeKI GCWGC 4 cut(s) 181, 374, 466, 568
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 4 cut(s) 429, 450, 465, 501
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 193, 361, 453
BccI CCATC 8 cut(s) 19, 161, 359, 397, 442, 478, 514, 523
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 3 cut(s) 234, 483, 519
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 182, 375, 467, 569
BlsI GCNGC 4 cut(s) 183, 376, 468, 570
Bme18I GGWCC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 74
BmsI GCATC 3 cut(s) 70, 310, 386
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 447
Bpu10I CCTNAGC 3 cut(s) 462, 498, 534
BsaI GGTCTC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
BseGI GGATG 2 cut(s) 153, 377
BseMII CTCAG 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 3 cut(s) 193, 361, 453
BshNI GGYRCC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 395
BspACI CCGC 2 cut(s) 179, 476
BspCNI CTCAG 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 129
BssMI GATC 1 cut(s) 395
BssNAI GTATAC 1 cut(s) 91
Bst1107I GTATAC 1 cut(s) 91
Bst4CI ACNGT 5 cut(s) 46, 77, 140, 242, 429
BstDEI CTNAG 3 cut(s) 462, 498, 534
BstF5I GGATG 2 cut(s) 153, 377
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 193, 361, 453
BstV2I GAAGAC 1 cut(s) 447
BstZ17I GTATAC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 153, 377
BtsIMutI CAGTG 2 cut(s) 247, 425
CaiI CAGNNNCTG 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 313
CviJI RGCY 8 cut(s) 35, 59, 129, 257, 311, 466, 502, 538
CviKI_1 RGCY 8 cut(s) 35, 59, 129, 257, 311, 466, 502, 538
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 3 cut(s) 462, 498, 534
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 223
FaeI CATG 1 cut(s) 316
FatI CATG 1 cut(s) 312
FblI GTMKAC 2 cut(s) 90, 291
Fnu4HI GCNGC 4 cut(s) 182, 375, 467, 569
FokI GGATG 2 cut(s) 140, 364
Fsp4HI GCNGC 4 cut(s) 182, 375, 467, 569
FspBI CTAG 3 cut(s) 234, 483, 519
GluI GCNGC 4 cut(s) 182, 375, 467, 569
HapII CCGG 1 cut(s) 36
Hin1II CATG 1 cut(s) 316
HpaII CCGG 1 cut(s) 36
HphI GGTGA 4 cut(s) 429, 450, 465, 501
Hpy166II GTNNAC 3 cut(s) 91, 223, 292
Hpy188I TCNGA 2 cut(s) 21, 175
Hpy188III TCNNGA 4 cut(s) 134, 234, 305, 393
Hpy8I GTNNAC 3 cut(s) 91, 223, 292
HpyAV CCTTC 2 cut(s) 239, 545
HpyCH4III ACNGT 5 cut(s) 46, 77, 140, 242, 429
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 3 cut(s) 167, 343, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 3 cut(s) 462, 498, 534
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 395
LpnPI CCDG 3 cut(s) 49, 312, 460
Lsp1109I GCAGC 3 cut(s) 193, 361, 453
LweI GCATC 3 cut(s) 70, 310, 386
MaeI CTAG 3 cut(s) 234, 483, 519
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 2 cut(s) 25, 40
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 4 cut(s) 236, 275, 278, 543
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 78, 317
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 475
NdeII GATC 1 cut(s) 395
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 40
PkrI GCNGC 4 cut(s) 183, 376, 468, 570
PshAI GACNNNNGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 78, 317
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 4 cut(s) 182, 375, 467, 569
Sau3AI GATC 1 cut(s) 395
Sau96I GGNCC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 3 cut(s) 70, 310, 386
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 78, 317
SsiI CCGC 2 cut(s) 179, 476
SspMI CTAG 3 cut(s) 234, 483, 519
TaaI ACNGT 5 cut(s) 46, 77, 140, 242, 429
TaiI ACGT 1 cut(s) 565
TaqI TCGA 1 cut(s) 133
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 247, 432
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 4 cut(s) 181, 374, 466, 568
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 335, 351, 375, 546
TspRI CASTG 2 cut(s) 247, 432
VpaK11BI GGWCC 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 90, 291
XspI CTAG 3 cut(s) 234, 483, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.