Rorug01G0236400

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
34078238 .. 34080589
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0236400.1

Sequence Viewer

Length: 405 bp
ATGCGAATTGACTTTCCTATGAGATTCAGAAGGGACTTCGATGTAGATTTTGGAACTTTATTGCAGAATAAAGTTTATATATCTAATGAGTTGAAAATTAATAAGATGCCTAAGTGTTTCAAGGGTGTCCCATTTGATTTTAGAAAAAGTTATTGCATCTTAAAATGTGTATTTCATCTTTATGGTCCTGGCATAGTCGAAATGGGGAGTTTGCCAGCTGCAGTCTGTGTACATCTTCGAGTCTGGTTTGACTTGTCAAATACTGTGCCACCTCCCTTAATTAGTAGGACCACGAGATTGAGCCATAATCATCACTGGGTACATTGCCTCTCAAAGTCTTGGTACGCTTATGAACTCTGCTCATATGGTTCTGCTACAGGAGTCAGCTACAGAAAGCAAGGTTAG
Functional Annotation

Protein Analysis

134

Amino Acids

15.58

Weight (kDa)

9.45

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 231, 321, 344
AgsI TTSAA 2 cut(s) 94, 121
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 218, 387
AluI AGCT 2 cut(s) 218, 387
ApeKI GCWGC 1 cut(s) 218
AseI ATTAAT 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 185, 288
AvaII GGWCC 2 cut(s) 185, 288
BauI CACGAG 1 cut(s) 292
BbvI GCAGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 189
BfmI CTRYAG 3 cut(s) 219, 375, 388
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 2 cut(s) 185, 288
BmgT120I GGNCC 2 cut(s) 185, 288
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 2 cut(s) 96, 165
BmuI ACTGGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 205
BslFI GGGAC 2 cut(s) 47, 113
BsmFI GGGAC 2 cut(s) 47, 113
Bsp1407I TGTACA 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 1 cut(s) 320
BssSI CACGAG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 111
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 3 cut(s) 219, 375, 388
BstV1I GCAGC 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 185, 288
Csp6I GTAC 3 cut(s) 230, 320, 343
CviJI RGCY 3 cut(s) 218, 303, 387
CviKI_1 RGCY 3 cut(s) 218, 303, 387
CviQI GTAC 3 cut(s) 230, 320, 343
DdeI CTNAG 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 185, 288
EcoRII CCWGG 1 cut(s) 187
FaiI YATR 9 cut(s) 20, 78, 80, 183, 194, 306, 351, 364, 366
FaqI GGGAC 2 cut(s) 47, 113
FauNDI CATATG 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HinfI GANTC 3 cut(s) 24, 240, 381
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 64, 156, 221
HpyF3I CTNAG 1 cut(s) 111
LpnPI CCDG 6 cut(s) 174, 201, 228, 229, 301, 363
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 2 cut(s) 96, 165
MboII GAAGA 1 cut(s) 227
MluCI AATT 3 cut(s) 6, 96, 279
MlyI GAGTC 2 cut(s) 249, 390
MnlI CCTC 2 cut(s) 282, 338
MseI TTAA 3 cut(s) 99, 161, 278
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 364
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 2 cut(s) 248, 389
PpsI GAGTC 2 cut(s) 248, 389
PshBI ATTAAT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 2 cut(s) 185, 288
PstI CTGCAG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 231, 321, 344
RsaNI GTAC 3 cut(s) 230, 320, 343
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 99, 161, 278
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 185, 288
SchI GAGTC 2 cut(s) 249, 390
ScrFI CCNGG 1 cut(s) 189
SetI ASST 4 cut(s) 220, 274, 389, 403
SfaNI GCATC 2 cut(s) 96, 165
SfcI CTRYAG 3 cut(s) 219, 375, 388
SinI GGWCC 2 cut(s) 185, 288
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 3 cut(s) 6, 96, 279
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 3 cut(s) 39, 198, 238
TasI AATT 3 cut(s) 6, 96, 279
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 3 cut(s) 99, 161, 278
Tru9I TTAA 3 cut(s) 99, 161, 278
TscAI CASTG 1 cut(s) 320
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 164, 366
TspRI CASTG 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 185, 288
VspI ATTAAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.