RLG00000029519

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000496
Physical Location & Seq
Reverse (-)
39770821 .. 39772543
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029519

Sequence Viewer

Length: 531 bp
ATGAGTACTGAGATTTTTTATAGCCGGCGAACGAAACAAGAAAAGTTATATATAGAGGCACTACAGAATGCAAGAAACACTATAACACTAGTTGCCATTTTGATTGCAACGGTTACTCTGCTGGCAGTAGTCGCCCGAGTGGTGATTATCAGGATAAACATATATATGAAAGGGAAGTTAATAGCAGGCACAACAACTACTTTCAAGGTGTTTGAAAGAAGTAATTATGTCGCGCTATTCACATCACTCTCGATAATTGTTGTTCCTATGAGTATCATTCCATATCGGAGAAAGCCATGGATAAGGTTATTGAGGGTTGCTCATAAGGTTAATTTTGTTGAATCAAGGTTTGTATCCAATAATTTCCGCACAGTCAGGTATGCAGTTGTTACAAGTTCAAATAAGGGGATTCGGTTTGGAACAGTTGAGCGGTTGGCTTCAAATGAGATCATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCAGTTGAAGAATTAAAACACTCTGGCCTCAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

177

Amino Acids

20.04

Weight (kDa)

10.48

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 19 - 124 7.8e-12 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 430
AccII CGCG 1 cut(s) 233
AciI CCGC 2 cut(s) 367, 430
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 7 cut(s) 205, 215, 341, 399, 441, 491, 500
AhlI ACTAGT 1 cut(s) 88
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 1 cut(s) 517
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 135
BciVI GTATCC 1 cut(s) 364
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BsaJI CCNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 25
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 519
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 2 cut(s) 367, 430
BspANI GGCC 1 cut(s) 519
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 450
BsrBI CCGCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 4 cut(s) 112, 373, 424, 457
BstC8I GCNNGC 3 cut(s) 26, 123, 187
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 450
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 1 cut(s) 233
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 26, 123, 187
CciI TCATGA 1 cut(s) 450
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 24
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 297, 451
CviJI RGCY 5 cut(s) 24, 295, 437, 467, 519
CviKI_1 RGCY 5 cut(s) 24, 295, 437, 467, 519
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 2 cut(s) 300, 454
FatI CATG 2 cut(s) 296, 450
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 519
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 235
Hin1II CATG 2 cut(s) 300, 454
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 2 cut(s) 341, 409
HpaI GTTAAC 1 cut(s) 462
HpaII CCGG 1 cut(s) 25
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 151, 250, 451
Hpy8I GTNNAC 1 cut(s) 462
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 4 cut(s) 112, 373, 424, 457
HpyCH4V TGCA 3 cut(s) 71, 107, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 2 cut(s) 300, 454
HspAI GCGC 1 cut(s) 233
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
KspAI GTTAAC 1 cut(s) 462
Kzo9I GATC 1 cut(s) 447
LpnPI CCDG 6 cut(s) 38, 107, 136, 171, 361, 501
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 112, 388
MalI GATC 1 cut(s) 449
MbiI CCGCTC 1 cut(s) 430
MboI GATC 1 cut(s) 447
MboII GAAGA 2 cut(s) 490, 512
MluCI AATT 5 cut(s) 223, 255, 331, 361, 503
MnlI CCTC 3 cut(s) 49, 306, 530
MroNI GCCGGC 1 cut(s) 24
MseI TTAA 4 cut(s) 179, 330, 461, 506
MslI CAYNNNNRTG 2 cut(s) 164, 455
MspI CCGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 296
NdeII GATC 1 cut(s) 447
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 2 cut(s) 300, 454
PagI TCATGA 1 cut(s) 450
PctI GAATGC 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 341, 409
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 164, 455
SaqAI TTAA 4 cut(s) 179, 330, 461, 506
Sau3AI GATC 1 cut(s) 447
ScaI AGTACT 1 cut(s) 7
SetI ASST 6 cut(s) 210, 308, 330, 350, 380, 469
SfcI CTRYAG 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 164, 455
SpeI ACTAGT 1 cut(s) 88
Sse9I AATT 5 cut(s) 223, 255, 331, 361, 503
SsiI CCGC 2 cut(s) 367, 430
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 4 cut(s) 112, 373, 424, 457
TaqI TCGA 1 cut(s) 251
TasI AATT 5 cut(s) 223, 255, 331, 361, 503
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 341, 409
Tru1I TTAA 4 cut(s) 179, 330, 461, 506
Tru9I TTAA 4 cut(s) 179, 330, 461, 506
TscAI CASTG 1 cut(s) 462
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 462
XspI CTAG 1 cut(s) 89
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.