Rh1BG105500

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
18438985 .. 18440578
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG105500.1

Sequence Viewer

Length: 1122 bp
ATGCCTAAACCATCTTTTCAGATCGTAACAAAAGCCGGAGTGACAGTATTCCACTTGGCTGTGAAATATGGGCGCTGTGATGCTATAGTATACTTGACCTATGTCTGTGATGATATGGATTTCTTTGGTTGTCGAGACCGTTATAGTAATACCATCCTACATCTTGCAGTTTCTGAAGCGCAGCATAAGATAGCAGAGTACCTAATCAGCGAAAAAAAAGTGGACCTCAACTCTAGAAACAATGAAGGACTGACAGCCCTTAACCACCTCAAACAGAGCAAAGAAAGTGTAGACAATCAGCGTCTTGAAGCCATGCTAATGAAAGCAGGAGGTAAAACAAGGATTGAACTGTTATCTACTTCACCAAAAGCAGATAAAGCCACTGCTCAACCAGTGACACTTCCTGAAAACATTCCGAAACGAGCACAATTTTTTAAAGAGTATGAACTGCAGTTGTCCATCATAAATGAAATAACTTCTGCTGCATCCAAATCCCCATCAAGATCATTAGCACCTATGTCCCTGATGTCATCACCGTTTCCATCACCCCAATCCAGCAAGTCTTCACCTAAGCTGCCATCACCACAATCTAGCAAGTCATCGCCTAAGCTACCATCACCACCATCTAGCAAGTTATCGCCTCAGCTTCAGGTTGGGGAAGGTTCATCACGTCAGCAGCAAGTTGGATCAGCATTTGAAGTTAAAGAGGGACTGGATTATGAAACACAGAAGAAGCAAGAGTTTCTTTTGCAAACTTTTGTGAGACAACACTATCCAAGCAAATGGAACCAAACAAAAATGAGTACTGAGATTTTTTATAGCCGGCGAAGGAAACATGAAAAGTTATATACAGAGGCACTACAGAATGCAAGAAACACTATAACACTAGTTGCCATTTTGATTGCAACGGTTACTCTGCTGGCATTAGTCCCCCGAGTGGTGATTATCAGGATAAACATATATATGAAAGGGAAGTCAATAGCAGGCACAACAACTACTTTCAAGGTGTTTGAAATAAGTAATTATGTCGTGCTATTCACATCACTCTCGATAATTGTTGTTCTTATGAGTATCATTCCATATCGGAGAGCCATGGATAAGGTTGTTGAGGGTTGCTCATAA
Functional Annotation

Protein Analysis

373

Amino Acids

41.72

Weight (kDa)

9.65

Isoelectric Point (pI)

65.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 86 2.4e-07 Ankyrin repeats (3 copies)
PGG PF13962 285 - 358 1.4e-10 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 90, 291
AclWI GGATC 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 195, 632
AfaI GTAC 2 cut(s) 200, 805
AfiI CCNNNNNNNGG 1 cut(s) 937
AgsI TTSAA 5 cut(s) 308, 347, 698, 1003, 1013
AhlI ACTAGT 1 cut(s) 886
AjiI CACGTC 1 cut(s) 671
AluBI AGCT 3 cut(s) 574, 610, 646
AluI AGCT 3 cut(s) 574, 610, 646
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 129, 757
AlwI GGATC 1 cut(s) 694
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 933
ApeKI GCWGC 4 cut(s) 181, 482, 574, 676
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 2 cut(s) 75, 181
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 7 cut(s) 354, 525, 537, 558, 573, 609, 952
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 427
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 193, 469, 561, 688
BccI CCATC 8 cut(s) 19, 161, 467, 505, 550, 586, 622, 631
BcoDI GTCTC 2 cut(s) 129, 757
BcuI ACTAGT 1 cut(s) 886
BfaI CTAG 4 cut(s) 234, 591, 627, 887
BfmI CTRYAG 3 cut(s) 84, 449, 860
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 4 cut(s) 182, 483, 575, 677
BlsI GCNGC 4 cut(s) 183, 484, 576, 678
BmcAI AGTACT 1 cut(s) 805
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 933
BmgBI CACGTC 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 788
BmsI GCATC 2 cut(s) 70, 494
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 1 cut(s) 1100
Bpu10I CCTNAGC 3 cut(s) 570, 606, 642
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 1092
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 937
Bse118I RCCGGY 1 cut(s) 822
Bse1I ACTGG 2 cut(s) 392, 717
BseDI CCNNGG 1 cut(s) 1092
BseGI GGATG 2 cut(s) 153, 485
BseLI CCNNNNNNNGG 1 cut(s) 937
BseMII CTCAG 2 cut(s) 656, 798
BseNI ACTGG 2 cut(s) 392, 717
BseXI GCAGC 4 cut(s) 193, 469, 561, 688
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 933
BsiSI CCGG 2 cut(s) 36, 823
BslFI GGGAC 3 cut(s) 505, 723, 914
BslI CCNNNNNNNGG 1 cut(s) 937
BsmAI GTCTC 2 cut(s) 129, 757
BsmFI GGGAC 3 cut(s) 505, 723, 914
BsmI GAATGC 1 cut(s) 871
Bso31I GGTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 3 cut(s) 21, 503, 686
Bsp19I CCATGG 1 cut(s) 1092
BspCNI CTCAG 2 cut(s) 655, 799
BspLI GGNNCC 1 cut(s) 788
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 1 cut(s) 694
BspTNI GGTCTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 822
BsrI ACTGG 2 cut(s) 392, 717
BssAI RCCGGY 1 cut(s) 822
BssECI CCNNGG 1 cut(s) 1092
BssMI GATC 3 cut(s) 21, 503, 686
BssNAI GTATAC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 1092
Bst1107I GTATAC 1 cut(s) 91
Bst4CI ACNGT 5 cut(s) 46, 140, 351, 537, 910
BstC8I GCNNGC 3 cut(s) 824, 921, 985
BstDEI CTNAG 4 cut(s) 570, 606, 642, 807
BstDSI CCRYGG 1 cut(s) 1092
BstF5I GGATG 2 cut(s) 153, 485
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 2 cut(s) 75, 181
BstKTI GATC 3 cut(s) 24, 506, 689
BstMAI GTCTC 2 cut(s) 129, 757
BstMBI GATC 3 cut(s) 21, 503, 686
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 3 cut(s) 84, 449, 860
BstV1I GCAGC 4 cut(s) 193, 469, 561, 688
BstV2I GAAGAC 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 783
BstZ17I GTATAC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 1092
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 671
BtsCI GGATG 2 cut(s) 153, 485
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 399
Cac8I GCNNGC 3 cut(s) 824, 921, 985
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 2 cut(s) 75, 181
Cfr10I RCCGGY 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 199, 804
CviAII CATG 3 cut(s) 313, 836, 1093
CviQI GTAC 2 cut(s) 199, 804
DdeI CTNAG 4 cut(s) 570, 606, 642, 807
DpnI GATC 3 cut(s) 23, 505, 688
DpnII GATC 3 cut(s) 21, 503, 686
DraI TTTAAA 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 1092
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 195, 632
Eco88I CYCGRG 1 cut(s) 933
EcoT14I CCWWGG 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 1092
FaeI CATG 3 cut(s) 316, 839, 1096
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 3 cut(s) 505, 723, 914
FatI CATG 3 cut(s) 312, 835, 1092
FblI GTMKAC 2 cut(s) 90, 291
Fnu4HI GCNGC 4 cut(s) 182, 483, 575, 677
FokI GGATG 2 cut(s) 140, 472
Fsp4HI GCNGC 4 cut(s) 182, 483, 575, 677
FspBI CTAG 4 cut(s) 234, 591, 627, 887
GlaI GCGC 2 cut(s) 74, 180
GluI GCNGC 4 cut(s) 182, 483, 575, 677
HaeII RGCGCY 1 cut(s) 76
HapII CCGG 2 cut(s) 36, 823
HgaI GACGC 1 cut(s) 290
HhaI GCGC 2 cut(s) 75, 181
Hin1II CATG 3 cut(s) 316, 839, 1096
Hin6I GCGC 2 cut(s) 73, 179
HinP1I GCGC 2 cut(s) 73, 179
HpaII CCGG 2 cut(s) 36, 823
HphI GGTGA 7 cut(s) 354, 525, 537, 558, 573, 609, 952
Hpy166II GTNNAC 3 cut(s) 91, 223, 292
Hpy188I TCNGA 4 cut(s) 21, 175, 417, 1086
Hpy188III TCNNGA 7 cut(s) 134, 234, 305, 404, 501, 949, 1048
Hpy8I GTNNAC 3 cut(s) 91, 223, 292
HpyAV CCTTC 3 cut(s) 239, 653, 822
HpyCH4III ACNGT 5 cut(s) 46, 140, 351, 537, 910
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 6 cut(s) 167, 451, 485, 751, 869, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 4 cut(s) 570, 606, 642, 807
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 3 cut(s) 316, 839, 1096
HspAI GCGC 2 cut(s) 73, 179
KroI GCCGGC 1 cut(s) 822
KroNI GCCGGC 1 cut(s) 824
Kzo9I GATC 3 cut(s) 21, 503, 686
Lsp1109I GCAGC 4 cut(s) 193, 469, 561, 688
LweI GCATC 2 cut(s) 70, 494
MaeI CTAG 4 cut(s) 234, 591, 627, 887
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 4 cut(s) 25, 40, 394, 910
MalI GATC 3 cut(s) 23, 505, 688
MboI GATC 3 cut(s) 21, 503, 686
MboII GAAGA 2 cut(s) 555, 742
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 3 cut(s) 428, 1021, 1053
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 7 cut(s) 236, 278, 323, 651, 700, 847, 1102
MroNI GCCGGC 1 cut(s) 822
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 3 cut(s) 261, 435, 702
MslI CAYNNNNRTG 2 cut(s) 317, 962
MspI CCGG 2 cut(s) 36, 823
Mva1269I GAATGC 1 cut(s) 871
MwoI GCNNNNNNNGC 1 cut(s) 377
NaeI GCCGGC 1 cut(s) 824
NcoI CCATGG 1 cut(s) 1092
NdeII GATC 3 cut(s) 21, 503, 686
NgoMIV GCCGGC 1 cut(s) 822
NlaIII CATG 3 cut(s) 316, 839, 1096
NlaIV GGNNCC 1 cut(s) 788
NmuCI GTSAC 2 cut(s) 40, 394
PctI GAATGC 1 cut(s) 871
PdiI GCCGGC 1 cut(s) 824
PdmI GAANNNNTTC 1 cut(s) 411
PkrI GCNGC 4 cut(s) 183, 484, 576, 678
PshAI GACNNNNGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 788
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 200, 805
RsaNI GTAC 2 cut(s) 199, 804
RseI CAYNNNNRTG 2 cut(s) 317, 962
SaqAI TTAA 3 cut(s) 261, 435, 702
SatI GCNGC 4 cut(s) 182, 483, 575, 677
Sau3AI GATC 3 cut(s) 21, 503, 686
Sau96I GGNCC 1 cut(s) 223
ScaI AGTACT 1 cut(s) 805
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 2 cut(s) 70, 494
SfcI CTRYAG 3 cut(s) 84, 449, 860
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 317, 962
SpeI ACTAGT 1 cut(s) 886
Sse9I AATT 3 cut(s) 428, 1021, 1053
SspMI CTAG 4 cut(s) 234, 591, 627, 887
StyI CCWWGG 1 cut(s) 1092
TaaI ACNGT 5 cut(s) 46, 140, 351, 537, 910
TaiI ACGT 1 cut(s) 673
TaqI TCGA 2 cut(s) 133, 1049
TasI AATT 3 cut(s) 428, 1021, 1053
TatI WGTACW 1 cut(s) 803
Tru1I TTAA 3 cut(s) 261, 435, 702
Tru9I TTAA 3 cut(s) 261, 435, 702
TscAI CASTG 2 cut(s) 388, 399
TseFI GTSAC 2 cut(s) 40, 394
TseI GCWGC 4 cut(s) 181, 482, 574, 676
Tsp45I GTSAC 2 cut(s) 40, 394
TspDTI ATGAA 8 cut(s) 258, 335, 459, 483, 654, 735, 852, 980
TspRI CASTG 2 cut(s) 388, 399
VpaK11BI GGWCC 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 90, 291
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 4 cut(s) 234, 591, 627, 887
ZrmI AGTACT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.