Rh2DG429800

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000496
Physical Location & Seq
Forward (+)
62082605 .. 62083917
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG429800.1

Sequence Viewer

Length: 735 bp
ATGGCTAAACCAGCTTTTCAGATCGTAACAAAAGCCGGCGAGACGATAGCAGAGTACCTAATCAGCAAAAAGAAAGTAGAGCTCAATTATCGAAACAATGAAGGACTCACAGCCCTTGACCTCCTCAAACAGACCAAGGAAAGTGTAGACAATCAGCGTCTCGAATCCATGCTAATGAAAGCAGGAGGTAAAACAAGGATTGTGCTGTTATCTACTTCACCAAAAGCAGATAAAGCCACCGCTCAGCCAGTGACACTTCCTGAAAACATTCCGAAACGAGCACAATTCGTTAAAGAGTATGAACTGCAGTTGTCCATCATTAATGAGATAGCTTCTGCGGCATCCAAGTCCCCATCAAGCTCATCAGCACCTATGTCCAGGATGTCATCACATTTTCCATCACCCCAATCCAGCAAGTCTTCGCCTAGGCTACCATCACCGCAATCTAGCAAGTCATCACCTAAGCTGCCATCACCGCCATCTAGCAAGTCATCGCCTCAGCCTCAGGAGGCTTATCACCTCAGCAGCAAGTTGGATCAGCATTTGAAGTTGAGGAGGGACTGGATTATGAAAGACAAAAGAAGCAAGAGTTTCTTCTGCAAACCTTTGCCAGACAACACAAGCATCCTAGAAAATGGAACCAATCAGAAATGGGTACGGAGATTTTCTACAACCGGCACAGGAAGCATGAAAAGGTGTACACAGAGGCACTACAGAATGCCAGGAACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

244

Amino Acids

27.15

Weight (kDa)

10.14

Isoelectric Point (pI)

70.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 147
AciI CCGC 4 cut(s) 240, 338, 440, 476
AclWI GGATC 1 cut(s) 543
AfaI GTAC 3 cut(s) 56, 657, 700
AgsI TTSAA 1 cut(s) 547
AjnI CCWGG 2 cut(s) 377, 721
AluBI AGCT 5 cut(s) 14, 82, 332, 360, 466
AluI AGCT 5 cut(s) 14, 82, 332, 360, 466
Alw21I GWGCWC 2 cut(s) 84, 283
Alw26I GTCTC 2 cut(s) 35, 164
AlwI GGATC 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 466, 525
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 267
AspA2I CCTAGG 1 cut(s) 425
AsuHPI GGTGA 6 cut(s) 210, 393, 429, 450, 465, 509
AvrII CCTAGG 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 504
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 84, 283
BbvCI CCTCAGC 2 cut(s) 498, 521
BbvI GCAGC 2 cut(s) 453, 537
BccI CCATC 6 cut(s) 323, 361, 406, 442, 478, 487
BciT130I CCWGG 2 cut(s) 379, 723
BcoDI GTCTC 2 cut(s) 35, 164
BfaI CTAG 4 cut(s) 426, 447, 483, 629
BfmI CTRYAG 2 cut(s) 305, 712
BisI GCNGC 3 cut(s) 339, 467, 526
BlnI CCTAGG 1 cut(s) 425
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 3 cut(s) 340, 468, 527
Bme1390I CCNGG 2 cut(s) 379, 723
BmiI GGNNCC 1 cut(s) 640
BmrFI CCNGG 2 cut(s) 379, 723
BmsI GCATC 2 cut(s) 350, 633
BpiI GAAGAC 1 cut(s) 411
Bpu10I CCTNAGC 3 cut(s) 462, 498, 521
Bpu1102I GCTNAGC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 135, 425
Bse118I RCCGGY 2 cut(s) 35, 674
Bse1I ACTGG 2 cut(s) 248, 566
Bse21I CCTNAGG 1 cut(s) 504
BseBI CCWGG 2 cut(s) 379, 723
BseDI CCNNGG 2 cut(s) 135, 425
BseGI GGATG 3 cut(s) 341, 387, 624
BseMII CTCAG 4 cut(s) 257, 512, 518, 535
BseNI ACTGG 2 cut(s) 248, 566
BseRI GAGGAG 2 cut(s) 113, 568
BseXI GCAGC 2 cut(s) 453, 537
BsiHKAI GWGCWC 2 cut(s) 84, 283
BsiSI CCGG 2 cut(s) 36, 675
BslFI GGGAC 2 cut(s) 334, 572
BsmAI GTCTC 2 cut(s) 35, 164
BsmBI CGTCTC 2 cut(s) 35, 164
BsmFI GGGAC 2 cut(s) 334, 572
BsmI GAATGC 1 cut(s) 723
Bsp1286I GDGCHC 2 cut(s) 84, 283
Bsp1407I TGTACA 1 cut(s) 698
Bsp143I GATC 2 cut(s) 21, 535
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 4 cut(s) 240, 338, 440, 476
BspCNI CTCAG 4 cut(s) 256, 511, 517, 534
BspLI GGNNCC 1 cut(s) 640
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 242
BsrFI RCCGGY 2 cut(s) 35, 674
BsrGI TGTACA 1 cut(s) 698
BsrI ACTGG 2 cut(s) 248, 566
BssAI RCCGGY 2 cut(s) 35, 674
BssECI CCNNGG 2 cut(s) 135, 425
BssMI GATC 2 cut(s) 21, 535
BssT1I CCWWGG 2 cut(s) 135, 425
Bst2UI CCWGG 2 cut(s) 379, 723
BstAUI TGTACA 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 5 cut(s) 243, 462, 498, 504, 521
BstF5I GGATG 3 cut(s) 341, 387, 624
BstKTI GATC 2 cut(s) 24, 538
BstMAI GTCTC 2 cut(s) 35, 164
BstMBI GATC 2 cut(s) 21, 535
BstMWI GCNNNNNNNGC 5 cut(s) 11, 233, 338, 475, 684
BstNI CCWGG 2 cut(s) 379, 723
BstSCI CCNGG 2 cut(s) 377, 721
BstSFI CTRYAG 2 cut(s) 305, 712
BstV1I GCAGC 2 cut(s) 453, 537
BstV2I GAAGAC 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 504
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 3 cut(s) 341, 387, 624
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 37
Cfr10I RCCGGY 2 cut(s) 35, 674
CseI GACGC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 55, 656, 699
CviAII CATG 2 cut(s) 169, 688
CviQI GTAC 3 cut(s) 55, 656, 699
DdeI CTNAG 5 cut(s) 243, 462, 498, 504, 521
DpnI GATC 2 cut(s) 23, 537
DpnII GATC 2 cut(s) 21, 535
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 135, 425
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 377, 721
EcoT14I CCWWGG 2 cut(s) 135, 425
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 135, 425
Esp3I CGTCTC 2 cut(s) 35, 164
FaeI CATG 2 cut(s) 172, 691
FaiI YATR 6 cut(s) 170, 300, 374, 569, 689, 733
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 2 cut(s) 334, 572
FatI CATG 2 cut(s) 168, 687
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 339, 467, 526
FokI GGATG 3 cut(s) 328, 394, 611
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 3 cut(s) 339, 467, 526
FspBI CTAG 4 cut(s) 426, 447, 483, 629
GluI GCNGC 3 cut(s) 339, 467, 526
HapII CCGG 2 cut(s) 36, 675
HgaI GACGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 172, 691
HinfI GANTC 2 cut(s) 105, 164
HpaII CCGG 2 cut(s) 36, 675
HphI GGTGA 6 cut(s) 210, 393, 429, 450, 465, 509
Hpy166II GTNNAC 3 cut(s) 148, 699, 701
Hpy188I TCNGA 3 cut(s) 21, 273, 648
Hpy188III TCNNGA 3 cut(s) 161, 260, 506
Hpy8I GTNNAC 3 cut(s) 148, 699, 701
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 307, 600
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 233, 338, 475, 684
HpyF3I CTNAG 5 cut(s) 243, 462, 498, 504, 521
Hsp92II CATG 2 cut(s) 172, 691
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 21, 535
Lsp1109I GCAGC 2 cut(s) 453, 537
LweI GCATC 2 cut(s) 350, 633
MaeI CTAG 4 cut(s) 426, 447, 483, 629
MaeIII GTNAC 2 cut(s) 25, 250
MalI GATC 2 cut(s) 23, 537
MbiI CCGCTC 1 cut(s) 242
MboI GATC 2 cut(s) 21, 535
MboII GAAGA 2 cut(s) 411, 586
MhlI GDGCHC 2 cut(s) 84, 283
MluCI AATT 2 cut(s) 85, 284
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 513
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 291, 321
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 2 cut(s) 36, 675
MspR9I CCNGG 2 cut(s) 379, 723
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 2 cut(s) 379, 723
MwoI GCNNNNNNNGC 5 cut(s) 11, 233, 338, 475, 684
NaeI GCCGGC 1 cut(s) 37
NdeII GATC 2 cut(s) 21, 535
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 172, 691
NlaIV GGNNCC 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 250
PctI GAATGC 1 cut(s) 723
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 377
PkrI GCNGC 3 cut(s) 340, 468, 527
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 377, 721
PspGI CCWGG 2 cut(s) 377, 721
PspN4I GGNNCC 1 cut(s) 640
PstI CTGCAG 1 cut(s) 309
RsaI GTAC 3 cut(s) 56, 657, 700
RsaNI GTAC 3 cut(s) 55, 656, 699
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 291, 321
SatI GCNGC 3 cut(s) 339, 467, 526
Sau3AI GATC 2 cut(s) 21, 535
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 379, 723
SduI GDGCHC 2 cut(s) 84, 283
SfaNI GCATC 2 cut(s) 350, 633
SfcI CTRYAG 2 cut(s) 305, 712
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 2 cut(s) 85, 284
SsiI CCGC 4 cut(s) 240, 338, 440, 476
SspMI CTAG 4 cut(s) 426, 447, 483, 629
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 377, 721
StyI CCWWGG 2 cut(s) 135, 425
TaqI TCGA 2 cut(s) 91, 162
TasI AATT 2 cut(s) 85, 284
TatI WGTACW 1 cut(s) 698
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 291, 321
Tru9I TTAA 2 cut(s) 291, 321
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 466, 525
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 5 cut(s) 114, 191, 315, 584, 704
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 1 cut(s) 255
VspI ATTAAT 1 cut(s) 321
XmaJI CCTAGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 4 cut(s) 426, 447, 483, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.