Rh2DG430200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000496
Physical Location & Seq
Forward (+)
62115061 .. 62116047
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG430200.1

Sequence Viewer

Length: 987 bp
ATGGAGATTAATTCACGGAACAGCAAAGGACTTACTGCATTTGACATCCTCAGTCAGGCAAAAGACAGTGTAGAGGCTCGTCATCTTCAGACAATATTCCATAAAGCCAGTGGTGAAAGATGCACTAATGTGACAAGTACATGTTCACCAGAAACATCATCTTCATGGCAGAGTTACATATTCGAATCAGACATGTCTATTACAAATGAAAATGCTTTACCCTCTTTGCAAGAAATAACCTGCACTCAGCCAGACAACCAATACAAGTCAAGACAGTCATCGGTACTCCACAATCAAGTTCAAGGGAGATTTGACAAGGCAGCATACAAACTAAAGTCCTCTCCTTCAACCAACTCACATCATCAACGCAGCAAGTCTTCGAGCAAAAGGCACTGCAAAGATCATAAGCAGCATAAGATGTACAGAGAGGCGATACAGAATGCGAGGAACACCATAACACTAGTTGCCATTTTAATTGCAACAGTTACTTTTACTGCTGGAATTACCCCTCCAGGTGGTGTCTATCAGGATGGAGCAATGAAAGGGAAGTCGATAGCAGGCACAACAACATCTTTCAAGGTGTTTGCAATAAGCAATGACATTGCTCTCTTCTCATCACTGTCAATAGTTGTTGTTCTTGTTAGTATCATACCTTTCAGACGAAAACCGCAGATGAATCTCTTGGTGTTTGCCCACAAGGTCATGTGGGTAGCTGTGGCTTTCATGGCGACAGGTTACGTTGCAGCCACATGGGTGATCATGCCGAGAAATCACGGGACTGCTTTTGTGTTTGTGGCTCTACTGTCTGTCAGTGGTGGCACTCTAGGAACAATTTTCATTGGTTTGGGAGTGATGCTTGTGGATCATTGGCTAAGAAAGTTGAATTGGAGGAAACTGAAAAGGGGAATCTGGGGAGGTGCAGATGAAATTGAAAGCCAAAATTCTGATGTTGAGAGCTCATTCCATCAAGGCTATCACTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

328

Amino Acids

36.35

Weight (kDa)

9.65

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 143 - 252 1.3e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AciI CCGC 1 cut(s) 668
AclWI GGATC 1 cut(s) 870
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 3 cut(s) 139, 285, 422
AfiI CCNNNNNNNGG 2 cut(s) 55, 515
AflIII ACRYGT 2 cut(s) 140, 192
AgsI TTSAA 5 cut(s) 302, 348, 577, 883, 932
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
AleI CACNNNNGTG 2 cut(s) 128, 752
AluBI AGCT 2 cut(s) 713, 957
AluI AGCT 2 cut(s) 713, 957
Alw21I GWGCWC 1 cut(s) 959
AlwI GGATC 1 cut(s) 870
ApeKI GCWGC 4 cut(s) 320, 369, 409, 743
ApoI RAATTY 1 cut(s) 940
AseI ATTAAT 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 125, 138, 766
AsuII TTCGAA 1 cut(s) 183
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 959
BbvI GCAGC 4 cut(s) 332, 381, 421, 755
BccI CCATC 2 cut(s) 524, 972
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 756
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 2 cut(s) 461, 824
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 4 cut(s) 321, 370, 410, 744
BlsI GCNGC 4 cut(s) 322, 371, 411, 745
Bme1390I CCNGG 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 110, 843
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 515
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 3 cut(s) 543, 600, 601
BseBI CCWGG 1 cut(s) 513
BseGI GGATG 2 cut(s) 45, 535
BseLI CCNNNNNNNGG 2 cut(s) 55, 515
BseMI GCAATG 3 cut(s) 543, 600, 601
BseMII CTCAG 2 cut(s) 64, 260
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 4 cut(s) 332, 381, 421, 755
BsgI GTGCAG 2 cut(s) 226, 939
BsiHKAI GWGCWC 1 cut(s) 959
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 2 cut(s) 55, 515
BsmFI GGGAC 1 cut(s) 790
BsmI GAATGC 1 cut(s) 445
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 959
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 3 cut(s) 400, 756, 862
BspACI CCGC 1 cut(s) 668
BspCNI CTCAG 2 cut(s) 63, 259
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 870
BspT104I TTCGAA 1 cut(s) 183
BsrDI GCAATG 3 cut(s) 543, 600, 601
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 1 cut(s) 108
BssMI GATC 3 cut(s) 400, 756, 862
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 5 cut(s) 68, 276, 484, 621, 804
Bst6I CTCTTC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 3 cut(s) 50, 246, 872
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 45, 535
BstKTI GATC 3 cut(s) 403, 759, 865
BstMBI GATC 3 cut(s) 400, 756, 862
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 2 cut(s) 144, 196
BstSCI CCNGG 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 332, 381, 421, 755
BstV2I GAAGAC 1 cut(s) 369
BtsCI GGATG 2 cut(s) 45, 535
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 5 cut(s) 73, 115, 391, 617, 817
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 559
Csp6I GTAC 3 cut(s) 138, 284, 421
CviAII CATG 7 cut(s) 141, 165, 193, 703, 724, 750, 760
CviQI GTAC 3 cut(s) 138, 284, 421
DdeI CTNAG 3 cut(s) 50, 246, 872
DpnI GATC 3 cut(s) 402, 758, 864
DpnII GATC 3 cut(s) 400, 756, 862
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Ecl136II GAGCTC 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 959
Eco53kI GAGCTC 1 cut(s) 957
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 957
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 959
FaeI CATG 7 cut(s) 144, 168, 196, 706, 727, 753, 763
FaqI GGGAC 1 cut(s) 790
FatI CATG 7 cut(s) 140, 164, 192, 702, 723, 749, 759
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 4 cut(s) 321, 370, 410, 744
FokI GGATG 2 cut(s) 32, 542
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 4 cut(s) 321, 370, 410, 744
FspBI CTAG 2 cut(s) 461, 824
GluI GCNGC 4 cut(s) 321, 370, 410, 744
GsuI CTGGAG 1 cut(s) 495
Hin1II CATG 7 cut(s) 144, 168, 196, 706, 727, 753, 763
HinfI GANTC 3 cut(s) 185, 676, 906
HphI GGTGA 3 cut(s) 125, 138, 766
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 4 cut(s) 90, 190, 659, 946
Hpy188III TCNNGA 2 cut(s) 270, 527
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 5 cut(s) 68, 276, 484, 621, 804
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 9 cut(s) 38, 123, 229, 243, 396, 479, 587, 743, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 3 cut(s) 50, 246, 872
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 7 cut(s) 144, 168, 196, 706, 727, 753, 763
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 3 cut(s) 400, 756, 862
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 4 cut(s) 332, 381, 421, 755
LweI GCATC 2 cut(s) 110, 843
MaeI CTAG 2 cut(s) 461, 824
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 4 cut(s) 130, 173, 484, 734
MalI GATC 3 cut(s) 402, 758, 864
MboI GATC 3 cut(s) 400, 756, 862
MboII GAAGA 4 cut(s) 77, 153, 369, 601
MhlI GDGCHC 1 cut(s) 959
MluCI AATT 7 cut(s) 10, 474, 501, 831, 883, 927, 940
MnlI CCTC 9 cut(s) 59, 67, 232, 349, 421, 438, 519, 882, 908
MseI TTAA 2 cut(s) 9, 473
MslI CAYNNNNRTG 3 cut(s) 128, 163, 752
MspR9I CCNGG 1 cut(s) 513
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 3 cut(s) 400, 756, 862
NlaIII CATG 7 cut(s) 144, 168, 196, 706, 727, 753, 763
NmeAIII GCCGAG 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 2 cut(s) 144, 196
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 2 cut(s) 128, 752
PciI ACATGT 2 cut(s) 140, 192
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 185, 676, 906
PkrI GCNGC 4 cut(s) 322, 371, 411, 745
PscI ACATGT 2 cut(s) 140, 192
PshBI ATTAAT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 959
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
RsaI GTAC 3 cut(s) 139, 285, 422
RsaNI GTAC 3 cut(s) 138, 284, 421
RseI CAYNNNNRTG 3 cut(s) 128, 163, 752
SacI GAGCTC 1 cut(s) 959
SaqAI TTAA 2 cut(s) 9, 473
SatI GCNGC 4 cut(s) 321, 370, 410, 744
Sau3AI GATC 3 cut(s) 400, 756, 862
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 1 cut(s) 959
SfaNI GCATC 2 cut(s) 110, 843
SfuI TTCGAA 1 cut(s) 183
SmiMI CAYNNNNRTG 3 cut(s) 128, 163, 752
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 7 cut(s) 10, 474, 501, 831, 883, 927, 940
SsiI CCGC 1 cut(s) 668
SspI AATATT 1 cut(s) 96
SspMI CTAG 2 cut(s) 461, 824
SstI GAGCTC 1 cut(s) 959
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 5 cut(s) 68, 276, 484, 621, 804
TaiI ACGT 1 cut(s) 741
TaqI TCGA 3 cut(s) 183, 380, 551
TasI AATT 7 cut(s) 10, 474, 501, 831, 883, 927, 940
TatI WGTACW 2 cut(s) 137, 420
TfiI GAWTC 3 cut(s) 185, 676, 906
Tru1I TTAA 2 cut(s) 9, 473
Tru9I TTAA 2 cut(s) 9, 473
TscAI CASTG 5 cut(s) 73, 115, 398, 624, 817
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 320, 369, 409, 743
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 7 cut(s) 153, 222, 554, 689, 712, 826, 939
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 5 cut(s) 73, 115, 398, 624, 817
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 940
XceI RCATGY 2 cut(s) 144, 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XspI CTAG 2 cut(s) 461, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.