RLG00000029774

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000496
Physical Location & Seq
Forward (+)
48877549 .. 48885050
7502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029774

Sequence Viewer

Length: 807 bp
ATGCCTAAACCATCTTTTCAGTTCGTAACAAAAGCCGGAGTGACAGTATTCCACTTGGCTGTGAAATATGGGCCCTGTGATGCTATAGTATACTTGACCTATGTCTATGATGATATGGATTTCTTTGGTTGTCGAGACCGTTATAGTAATACCATCCTACGTCTGCAGTTTCTGAAGCGCAACATAAGATTGATTAATTTTATCTTCTTCTTGTCCCAAATAGCAGAGTACCTAATCAGTGAAAAACAAGTGGACCTCAACTCTAGAAACAATGAAGGACTAACAGCCCTTGACCTCCTCAAACAGAGCAAAGAAAGTGTAGACAATCAGCGTCTTGAAGCCATGCTAATGAAAGTAGGAGTGACACTTCCTGAAAACATTCCGAAACAAGCACAATTTTTTAAAGAGTATGAACTGCAGTTGTCCATCATAAATGAAATAGCTTCTGCTGCATCTAAATCCCCATCAAGATCATCAGCACCTATGTCCCTGATCAAGTCTTCACCTAAGCTGCCATCACCGCAATCTAGCAAGTCATCGCCTAAGCTACCATCACCACCATCTAGCAAGTTATCGCCTCAGCTTCAGGTCGGGGAAGGCTCATCACTTATTGATGGCTATGATTATGTATTTTTTGAGAATGATCGTGTGGCTCACAAAGATGGGAAGCACATTGGCACCCAGAGATCGAAGTCACATCTTGGAGATGATAATCTCAAGGAATTTATCAATTTTACACTCCACTATATTACTAACTTGGACATACCGATAACGACGTCAGTGGAGTGGGGAACCTTTAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

269

Amino Acids

30.2

Weight (kDa)

8.37

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMM PF03332 190 - 258 6.9e-16 Eukaryotic phosphomannomutase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 779
AccB1I GGYRCC 1 cut(s) 677
AccI GTMKAC 2 cut(s) 90, 321
AciI CCGC 1 cut(s) 521
AcsI RAATTY 1 cut(s) 722
AcuI CTGAAG 2 cut(s) 194, 569
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 4 cut(s) 443, 511, 547, 583
AluI AGCT 4 cut(s) 443, 511, 547, 583
Alw26I GTCTC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 172
AoxI GGCC 1 cut(s) 71
ApaI GGGCCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 449, 511
ApoI RAATTY 1 cut(s) 722
AseI ATTAAT 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 71, 72, 253
AsuHPI GGTGA 3 cut(s) 495, 510, 546
AvaII GGWCC 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 436, 498
BccI CCATC 9 cut(s) 19, 161, 434, 472, 523, 559, 568, 608, 656
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 3 cut(s) 264, 528, 564
BfmI CTRYAG 3 cut(s) 84, 164, 416
BisI GCNGC 2 cut(s) 450, 512
BlsI GCNGC 2 cut(s) 451, 513
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 71, 72, 253
BmiI GGNNCC 3 cut(s) 73, 679, 793
BmsI GCATC 2 cut(s) 70, 461
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 492
Bpu10I CCTNAGC 3 cut(s) 507, 543, 579
BpuEI CTTGAG 1 cut(s) 701
BsaBI GATNNNNATC 1 cut(s) 711
BsaHI GRCGYC 1 cut(s) 776
BsaI GGTCTC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse8I GATNNNNATC 1 cut(s) 711
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 711
BseMII CTCAG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 2 cut(s) 436, 498
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 677
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 199, 472
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 2 cut(s) 199, 472
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 129
Bsp120I GGGCCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 4 cut(s) 470, 492, 643, 686
BspACI CCGC 1 cut(s) 521
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 592
BspLI GGNNCC 3 cut(s) 73, 679, 793
BspMAI CTGCAG 2 cut(s) 168, 420
BspT107I GGYRCC 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 129
BssMI GATC 4 cut(s) 470, 492, 643, 686
BssNAI GTATAC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 776
Bst1107I GTATAC 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 46, 140
BstACI GRCGYC 1 cut(s) 776
BstDEI CTNAG 3 cut(s) 507, 543, 579
BstF5I GGATG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 4 cut(s) 473, 495, 646, 689
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 4 cut(s) 470, 492, 643, 686
BstMWI GCNNNNNNNGC 2 cut(s) 449, 520
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 3 cut(s) 84, 164, 416
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 436, 498
BstV2I GAAGAC 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 244, 786
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 71, 72, 253
CseI GACGC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 343
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 3 cut(s) 507, 543, 579
DpnI GATC 4 cut(s) 472, 494, 645, 688
DpnII GATC 4 cut(s) 470, 492, 643, 686
DraI TTTAAA 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 194, 569
EcoO109I RGGNCCY 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 346
FaqI GGGAC 2 cut(s) 199, 472
FatI CATG 1 cut(s) 342
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 2 cut(s) 90, 321
Fnu4HI GCNGC 2 cut(s) 450, 512
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 450, 512
FspBI CTAG 3 cut(s) 264, 528, 564
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 450, 512
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 776
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HpaII CCGG 1 cut(s) 36
HphI GGTGA 3 cut(s) 495, 510, 546
Hpy166II GTNNAC 3 cut(s) 91, 253, 322
Hpy188I TCNGA 2 cut(s) 174, 384
Hpy188III TCNNGA 5 cut(s) 134, 264, 335, 371, 468
Hpy8I GTNNAC 3 cut(s) 91, 253, 322
Hpy99I CGWCG 1 cut(s) 778
HpyAV CCTTC 2 cut(s) 269, 590
HpyCH4III ACNGT 2 cut(s) 46, 140
HpyCH4IV ACGT 2 cut(s) 160, 776
HpyCH4V TGCA 3 cut(s) 166, 418, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 520
HpyF3I CTNAG 3 cut(s) 507, 543, 579
HpySE526I ACGT 2 cut(s) 160, 776
Hsp92I GRCGYC 1 cut(s) 776
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 470, 492, 643, 686
LpnPI CCDG 6 cut(s) 49, 88, 384, 503, 572, 695
Lsp1109I GCAGC 2 cut(s) 436, 498
LweI GCATC 2 cut(s) 70, 461
MaeI CTAG 3 cut(s) 264, 528, 564
MaeII ACGT 2 cut(s) 160, 776
MaeIII GTNAC 4 cut(s) 25, 40, 361, 693
MalI GATC 4 cut(s) 472, 494, 645, 688
MboI GATC 4 cut(s) 470, 492, 643, 686
MboII GAAGA 3 cut(s) 196, 199, 492
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 4 cut(s) 196, 395, 722, 730
MnlI CCTC 4 cut(s) 266, 305, 308, 588
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 4 cut(s) 195, 402, 798, 805
MslI CAYNNNNRTG 2 cut(s) 347, 660
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 449, 520
NdeII GATC 4 cut(s) 470, 492, 643, 686
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 3 cut(s) 73, 679, 793
NmuCI GTSAC 3 cut(s) 40, 361, 693
PdmI GAANNNNTTC 1 cut(s) 378
PkrI GCNGC 2 cut(s) 451, 513
PshAI GACNNNNGTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 73, 679, 793
PspOMI GGGCCC 1 cut(s) 71
PspPI GGNCC 3 cut(s) 71, 72, 253
PstI CTGCAG 2 cut(s) 168, 420
PstNI CAGNNNCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 347, 660
SaqAI TTAA 4 cut(s) 195, 402, 798, 805
SatI GCNGC 2 cut(s) 450, 512
Sau3AI GATC 4 cut(s) 470, 492, 643, 686
Sau96I GGNCC 3 cut(s) 71, 72, 253
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 2 cut(s) 70, 461
SfcI CTRYAG 3 cut(s) 84, 164, 416
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 347, 660
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 4 cut(s) 196, 395, 722, 730
SsiI CCGC 1 cut(s) 521
SspMI CTAG 3 cut(s) 264, 528, 564
TaaI ACNGT 2 cut(s) 46, 140
TaiI ACGT 2 cut(s) 163, 779
TaqI TCGA 2 cut(s) 133, 689
TasI AATT 4 cut(s) 196, 395, 722, 730
Tru1I TTAA 4 cut(s) 195, 402, 798, 805
Tru9I TTAA 4 cut(s) 195, 402, 798, 805
TscAI CASTG 2 cut(s) 244, 786
TseFI GTSAC 3 cut(s) 40, 361, 693
TseI GCWGC 2 cut(s) 449, 511
Tsp45I GTSAC 3 cut(s) 40, 361, 693
TspDTI ATGAA 4 cut(s) 288, 365, 426, 450
TspRI CASTG 2 cut(s) 244, 786
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 722
XbaI TCTAGA 1 cut(s) 263
XmiI GTMKAC 2 cut(s) 90, 321
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 3 cut(s) 264, 528, 564
ZraI GACGTC 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.