Rmu_co8197386.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8197386.1
OG0000496
Physical Location & Seq
Reverse (-)
1 .. 617
617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8197386.1_g000001.1.cds

Sequence Viewer

Length: 600 bp
atgtcaactccttttccatcaccccaatccagcaagtcttcacctaagctgccatcaccgcaatctggcaagtcatcgcctaagctgccatccccaccatctagcaagtcatcgcctcagcttcaggttggggaaggctcatcacgtcagcagcaagttggatcagcatttgaagttaaagagggactggaatatgaaagacagaagaagcatgagtttcttttgcaaacctttgcgagacaacactatccaagcaaatggaaccaaacagaaacgagtactgagattttctacagccggcgaaggaaacatgaaaaagtatatacagaggcactacagaatgcaaggaacactataacactagttgccattttgatcgcaacggttacttttgctgctggcattagtcccccgggtggtgtttatcaagataaacatatgaaagggaagtcaatagcaggcacaacaactgctttcaaggtgtttgaaataagcaattatgtcgcgctattcacatcactctcgatagttgttgttcttatgagtatcattccatatcggagaaagccattgataaggttgttgagggttgctcataag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

200

Amino Acids

22.28

Weight (kDa)

10.21

Isoelectric Point (pI)

77.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 506
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 65, 416
AgsI TTSAA 3 cut(s) 173, 478, 488
AhlI ACTAGT 1 cut(s) 361
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 3 cut(s) 49, 85, 121
AluI AGCT 3 cut(s) 49, 85, 121
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 412
ApeKI GCWGC 4 cut(s) 49, 85, 151, 395
AspLEI GCGC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 413, 414
AsuHPI GGTGA 3 cut(s) 12, 33, 48
AvaI CYCGRG 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 4 cut(s) 36, 72, 163, 382
BccI CCATC 4 cut(s) 25, 61, 97, 106
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BcnI CCSGG 2 cut(s) 413, 414
BcoDI GTCTC 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 2 cut(s) 102, 362
BfmI CTRYAG 2 cut(s) 292, 335
BisI GCNGC 4 cut(s) 50, 86, 152, 396
BlsI GCNGC 4 cut(s) 51, 87, 153, 397
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 413, 414
BmeT110I CYCGRG 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 413, 414
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 1 cut(s) 577
Bpu10I CCTNAGC 3 cut(s) 45, 81, 117
BpuMI CCSGG 2 cut(s) 413, 414
BsaJI CCNNGG 2 cut(s) 411, 412
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 416
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 411, 412
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 65, 416
BseMII CTCAG 2 cut(s) 131, 273
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 4 cut(s) 36, 72, 163, 382
Bsh1236I CGCG 1 cut(s) 506
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 298, 413
BslFI GGGAC 2 cut(s) 198, 393
BslI CCNNNNNNNGG 2 cut(s) 65, 416
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 198, 393
BsmI GAATGC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 412
Bsp143I GATC 2 cut(s) 161, 375
BspACI CCGC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 130, 274
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 411, 412
BssMI GATC 2 cut(s) 161, 375
Bst4CI ACNGT 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 299, 400, 460
BstDEI CTNAG 4 cut(s) 45, 81, 117, 282
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 506
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 2 cut(s) 164, 378
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 161, 375
BstMWI GCNNNNNNNGC 2 cut(s) 58, 85
BstSCI CCNGG 2 cut(s) 411, 412
BstSFI CTRYAG 2 cut(s) 292, 335
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 36, 72, 163, 382
BstV2I GAAGAC 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 258
BtgZI GCGATG 2 cut(s) 60, 96
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 3 cut(s) 299, 400, 460
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 1 cut(s) 297
Cfr9I CCCGGG 1 cut(s) 412
Csp6I GTAC 1 cut(s) 279
CviAII CATG 2 cut(s) 212, 311
CviJI RGCY 6 cut(s) 49, 85, 121, 138, 297, 568
CviKI_1 RGCY 6 cut(s) 49, 85, 121, 138, 297, 568
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 4 cut(s) 45, 81, 117, 282
DpnI GATC 2 cut(s) 163, 377
DpnII GATC 2 cut(s) 161, 375
Eco57I CTGAAG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 412
FaeI CATG 2 cut(s) 215, 314
FaqI GGGAC 2 cut(s) 198, 393
FatI CATG 2 cut(s) 211, 310
FauNDI CATATG 1 cut(s) 438
Fnu4HI GCNGC 4 cut(s) 50, 86, 152, 396
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 4 cut(s) 50, 86, 152, 396
FspBI CTAG 2 cut(s) 102, 362
GlaI GCGC 1 cut(s) 507
GluI GCNGC 4 cut(s) 50, 86, 152, 396
HapII CCGG 2 cut(s) 298, 413
HhaI GCGC 1 cut(s) 508
Hin1II CATG 2 cut(s) 215, 314
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 2 cut(s) 298, 413
HphI GGTGA 3 cut(s) 12, 33, 48
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 561
Hpy188III TCNNGA 2 cut(s) 428, 523
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 128, 297
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 226, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 85
HpyF3I CTNAG 4 cut(s) 45, 81, 117, 282
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 2 cut(s) 215, 314
HspAI GCGC 1 cut(s) 506
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 2 cut(s) 161, 375
LpnPI CCDG 8 cut(s) 43, 51, 110, 173, 311, 384, 426, 444
Lsp1109I GCAGC 4 cut(s) 36, 72, 163, 382
MaeI CTAG 2 cut(s) 102, 362
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 385
MalI GATC 2 cut(s) 163, 377
MboI GATC 2 cut(s) 161, 375
MboII GAAGA 2 cut(s) 30, 217
MluCI AATT 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 126, 175, 322, 579
MroNI GCCGGC 1 cut(s) 297
MseI TTAA 1 cut(s) 177
MspI CCGG 2 cut(s) 298, 413
MspR9I CCNGG 2 cut(s) 413, 414
Mva1269I GAATGC 1 cut(s) 346
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 2 cut(s) 58, 85
NaeI GCCGGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 413, 414
NdeI CATATG 1 cut(s) 438
NdeII GATC 2 cut(s) 161, 375
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 2 cut(s) 215, 314
NlaIV GGNNCC 1 cut(s) 263
PctI GAATGC 1 cut(s) 346
PdiI GCCGGC 1 cut(s) 299
PkrI GCNGC 4 cut(s) 51, 87, 153, 397
PspN4I GGNNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 4 cut(s) 50, 86, 152, 396
Sau3AI GATC 2 cut(s) 161, 375
ScaI AGTACT 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 413, 414
SetI ASST 9 cut(s) 46, 51, 87, 123, 129, 148, 233, 483, 581
SfcI CTRYAG 2 cut(s) 292, 335
SmaI CCCGGG 1 cut(s) 414
SpeI ACTAGT 1 cut(s) 361
Sse9I AATT 1 cut(s) 496
SsiI CCGC 1 cut(s) 59
SspMI CTAG 2 cut(s) 102, 362
StyD4I CCNGG 2 cut(s) 411, 412
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 524
TasI AATT 1 cut(s) 496
TatI WGTACW 1 cut(s) 278
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseI GCWGC 4 cut(s) 49, 85, 151, 395
TspDTI ATGAA 3 cut(s) 210, 327, 455
TspMI CCCGGG 1 cut(s) 412
XmaI CCCGGG 1 cut(s) 412
XspI CTAG 2 cut(s) 102, 362
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.