Rmu_co8359109.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8359109.1
OG0000496
Physical Location & Seq
Forward (+)
1 .. 1073
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8359109.1_g000001.1.cds

Sequence Viewer

Length: 579 bp
agatgttgttaaagagttgctaagagtgtgtcctgaccttgcttatatggttgatgagaaaggaaactatccattgcactatgcaactagcaaagaaaacagggagataacctggacactccttaagcttgatccaaagcttgctcagcagcacaatctcagtggtcacacacccttgcacttggcagcaataaactacaaagtctcagtccttcaagtttttgtctcaatggctaaaccatcttttcagatcgtaacaaaagctggagagacagtattccacttggctgtgaaatatgggcgctatgatgctatagtatacttgacctatgtctgtgatgatgcggatttctttgactgtcgagaccgttatagtaacaccatcctacatcttgcagtttctgaagcacagcataagatagcagagtacctaatcagcaaaaaaaaagtggagctcaattctagaaacaatgaaggactgacagcccttgacctcctcaaacagagcaaggaaagtgaagacaatcagcgtcttgaagccatgctaatgaaagcaggaggtaaaacaaggattgaact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

193

Amino Acids

21.99

Weight (kDa)

7.2

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 319
AciI CCGC 1 cut(s) 345
AclWI GGATC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 424
AfaI GTAC 1 cut(s) 429
AflII CTTAAG 1 cut(s) 123
AgsI TTSAA 3 cut(s) 216, 537, 576
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 4 cut(s) 128, 140, 264, 455
AluI AGCT 4 cut(s) 128, 140, 264, 455
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 4 cut(s) 209, 230, 264, 358
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 402
ApeKI GCWGC 2 cut(s) 149, 186
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspLEI GCGC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 2 cut(s) 161, 198
BccI CCATC 2 cut(s) 248, 390
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 4 cut(s) 209, 230, 264, 358
BfaI CTAG 2 cut(s) 88, 463
BfmI CTRYAG 1 cut(s) 313
BfoI RGCGCY 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 150, 187
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 2 cut(s) 151, 188
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 299, 332
BoxI GACNNNNGTC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 286
Bpu1102I GCTNAGC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 3 cut(s) 159, 173, 220
BseRI GAGGAG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 161, 198
BsiHKAI GWGCWC 1 cut(s) 457
BsmAI GTCTC 4 cut(s) 209, 230, 264, 358
Bso31I GGTCTC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 2 cut(s) 131, 250
Bsp1720I GCTNAGC 1 cut(s) 145
BspACI CCGC 1 cut(s) 345
BspCNI CTCAG 3 cut(s) 158, 172, 219
BspPI GGATC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 2 cut(s) 131, 250
BssNAI GTATAC 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 3 cut(s) 275, 360, 369
BstAFI CTTAAG 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 21, 145, 159, 206
BstF5I GGATG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 134, 253
BstMAI GTCTC 4 cut(s) 209, 230, 264, 358
BstMBI GATC 2 cut(s) 131, 250
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 113
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 161, 198
BstV2I GAAGAC 1 cut(s) 526
BstZ17I GTATAC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 402
CfoI GCGC 1 cut(s) 304
CseI GACGC 1 cut(s) 519
Csp6I GTAC 1 cut(s) 428
CspCI CAANNNNNGTGG 2 cut(s) 143, 178
CviAII CATG 1 cut(s) 542
CviJI RGCY 8 cut(s) 128, 140, 234, 264, 288, 455, 486, 540
CviKI_1 RGCY 8 cut(s) 128, 140, 234, 264, 288, 455, 486, 540
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 4 cut(s) 21, 145, 159, 206
DpnI GATC 2 cut(s) 133, 252
DpnII GATC 2 cut(s) 131, 250
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 457
FaeI CATG 1 cut(s) 545
FatI CATG 1 cut(s) 541
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 150, 187
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 150, 187
FspBI CTAG 2 cut(s) 88, 463
GlaI GCGC 1 cut(s) 303
GluI GCNGC 2 cut(s) 150, 187
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 305
HgaI GACGC 1 cut(s) 519
HhaI GCGC 1 cut(s) 304
Hin1II CATG 1 cut(s) 545
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HindIII AAGCTT 2 cut(s) 126, 138
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 2 cut(s) 250, 404
Hpy188III TCNNGA 4 cut(s) 33, 363, 463, 534
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 222, 468
HpyCH4III ACNGT 3 cut(s) 275, 360, 369
HpyCH4V TGCA 4 cut(s) 77, 84, 179, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 21, 145, 159, 206
Hsp92II CATG 1 cut(s) 545
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 131, 250
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 6 cut(s) 46, 86, 98, 125, 250, 541
Lsp1109I GCAGC 2 cut(s) 161, 198
LweI GCATC 2 cut(s) 299, 332
MaeI CTAG 2 cut(s) 88, 463
MaeIII GTNAC 3 cut(s) 165, 254, 375
MalI GATC 2 cut(s) 133, 252
MboI GATC 2 cut(s) 131, 250
MboII GAAGA 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 1 cut(s) 458
MnlI CCTC 3 cut(s) 504, 507, 552
MseI TTAA 2 cut(s) 10, 124
MslI CAYNNNNRTG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 2 cut(s) 131, 250
NlaIII CATG 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 165
PkrI GCNGC 2 cut(s) 151, 188
PshAI GACNNNNGTC 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 402
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 10, 124
SatI GCNGC 2 cut(s) 150, 187
Sau3AI GATC 2 cut(s) 131, 250
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 2 cut(s) 299, 332
SfcI CTRYAG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 1 cut(s) 458
SsiI CCGC 1 cut(s) 345
SspMI CTAG 2 cut(s) 88, 463
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 275, 360, 369
TaqI TCGA 1 cut(s) 362
TasI AATT 1 cut(s) 458
Tru1I TTAA 2 cut(s) 10, 124
Tru9I TTAA 2 cut(s) 10, 124
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 2 cut(s) 149, 186
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 487, 564
TspRI CASTG 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 462
XmiI GTMKAC 1 cut(s) 319
XspI CTAG 2 cut(s) 88, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.