Rroxscaffold_2G00105170

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
28597865 .. 28600396
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105170.1

Sequence Viewer

Length: 1500 bp
ATGGATCCAAGGCTTTTAGTGTGCATTAGCAGCAACAACATACCTGAATTTATCGACTTACATCATGAAAATGAAGGAATTATTGCGCAAAGAACAGCTGATTCCTTCAACACAGTTTTACACCTTGCTTCGAAACTGGGACAAAATGACATGGTCCTGGAGATTATTAAGTTATGCCCTGAATTGGTTGCTGCTGAAAACAAGTACCTTGAGACTCCAGTTCATGAAGCTTGTCGCCTTGGAAATGCCAACATCTTGAAGCTGCTGTTAGAAGCCAATCCTCAAGCAGCAAAGGATGTTGGGCTTGATCAAACATGTATTAATGTTGCTGCATCCAATGGACACACAGATATTGTCAGAGAGATACTAAACATCTGCCCTAACTATGCTCAAAAGGCTGATGACAATGGAAATTCACCTTTGCACTATGCTTGCAACAAAGGGCACAGGGAAATAACCTGGTTACTGCTACAGCGTGATGTCAATCTGGCCTTGCAGTATAACAACAATGGTTATACACCTTCTCATTTAGCAGCAATAAATGGAAACATATCAATCCTTGAAGACTTCGCTTTGAAAGCTCCAGCGGCTTTTCATTATCTCACAAAAGAAGAGGAGACAATATTTCATCTGACTATTGCTGAGTACTTGATCAACAAAGCAAAGATGGAGATTAATTCACGGAACAGCAAAGGACTTACTGCATTTGACCTCCTCAGTCAGGCCAAAGACAGTGTAGAGGCTCGTCATCTTCAGACAATATTCCATAAAGCCGGTGGTGAAAGATGCACTAATGTGACAAGTACTTGTTCACCAGAAACATCATCTTCAAGGCAGAGTTACCTATTCGAATCAGACATGTCTATTACAAATGAAAATGCTTTACCCTCTTTGCAAGAAATAACCTGCACTCAGCCAGACAACCAATACAAGTCAAGACAGTCATCGGTACTCCACAATCAAGTTCAGGGGAGATTTGACAAGGCAGCATACAAACTAAAGTCCACTCCCTCAACCAACTCGCATTATCAACGCAGCAAGTCTTCGAGCAAGAGGCACTGCAAAGATCATAAGCAGCATAAGATGTACAGAGAGGCGATACAGAATGCGAGGAACACCATAACACTAGTTGCCATTTTAATTGCAACAGTTACTTTTGCTGCTGGAATTACCCCTCCAGGCGGTGTCTATCAGGATGGAGCAATGAAAAGGGAAGTCGATAGCAGGCACAACAACATCTTTCAAGGTTTATGTTGCAGCCACATGGGTGATCATGCCGAGAAATCATGGGACGGCTTTTGTGTTTGTGGCTCTACTGTCTGTCAGTGGTGGCACTCTAGGAACAATTTTCATTGGTTTGGGAGTGATGCTTGTGGATCATTGGCTAAGAAAGTTGAATTGGAGGAAACTGAAAAGGGAATCTGGGGAGGTGCAGATGAAATTGAAAGCCAAAATTCGGATGTTGAGAGCTCATTCCATCAAGGCTATCACTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

499

Amino Acids

55.65

Weight (kDa)

6.17

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 93 1e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 108 - 188 1.7e-14 Ankyrin repeats (3 copies)
Ank PF00023 136 - 162 9.3e-06 Ankyrin repeat
PGG PF13962 365 - 401 2.4e-12 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
Acc36I ACCTGC 1 cut(s) 914
AciI CCGC 2 cut(s) 587, 1182
AclWI GGATC 2 cut(s) 12, 1384
AcsI RAATTY 3 cut(s) 47, 412, 1453
AcuI CTGAAG 1 cut(s) 737
AfaI GTAC 5 cut(s) 206, 647, 805, 951, 1088
AfiI CCNNNNNNNGG 4 cut(s) 184, 721, 1181, 1456
AflIII ACRYGT 2 cut(s) 314, 858
AgsI TTSAA 8 cut(s) 109, 259, 563, 577, 831, 1244, 1397, 1445
AhlI ACTAGT 1 cut(s) 1126
AjnI CCWGG 3 cut(s) 156, 458, 1177
AjuI GAANNNNNNNTTGG 2 cut(s) 1382, 1414
AleI CACNNNNGTG 2 cut(s) 794, 1266
AluBI AGCT 5 cut(s) 98, 230, 262, 581, 1470
AluI AGCT 5 cut(s) 98, 230, 262, 581, 1470
Alw21I GWGCWC 1 cut(s) 1472
Alw26I GTCTC 2 cut(s) 206, 611
AlwI GGATC 2 cut(s) 12, 1384
AoxI GGCC 2 cut(s) 489, 723
ApoI RAATTY 3 cut(s) 47, 412, 1453
AseI ATTAAT 2 cut(s) 321, 675
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 4 cut(s) 408, 791, 804, 1280
AsuII TTCGAA 2 cut(s) 131, 849
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1472
BbsI GAAGAC 2 cut(s) 570, 1035
Bbv12I GWGCWC 1 cut(s) 1472
BccI CCATC 3 cut(s) 661, 1190, 1485
BceAI ACGGC 1 cut(s) 1309
BciT130I CCWGG 3 cut(s) 158, 460, 1179
BclI TGATCA 3 cut(s) 307, 651, 1270
BcoDI GTCTC 2 cut(s) 206, 611
BcuI ACTAGT 1 cut(s) 1126
BfaI CTAG 2 cut(s) 1127, 1338
BfmI CTRYAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 914
BmcAI AGTACT 2 cut(s) 647, 805
Bme1390I CCNGG 3 cut(s) 158, 460, 1179
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 158, 460, 1179
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 3 cut(s) 341, 776, 1357
BmuI ACTGGG 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 570, 1035
BpmI CTGGAG 4 cut(s) 179, 201, 567, 1161
Bpu14I TTCGAA 2 cut(s) 131, 849
BpuEI CTTGAG 2 cut(s) 230, 267
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 8, 238
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 721, 1181, 1456
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 2 cut(s) 141, 218
Bse3DI GCAATG 1 cut(s) 1209
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 3 cut(s) 158, 460, 1179
BseDI CCNNGG 2 cut(s) 8, 238
BseGI GGATG 4 cut(s) 301, 332, 1201, 1465
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 4 cut(s) 184, 721, 1181, 1456
BseMI GCAATG 1 cut(s) 1209
BseMII CTCAG 3 cut(s) 633, 730, 926
BseNI ACTGG 2 cut(s) 141, 218
BseRI GAGGAG 2 cut(s) 629, 704
BseSI GKGCMC 1 cut(s) 447
BsgI GTGCAG 2 cut(s) 892, 1452
BshFI GGCC 2 cut(s) 491, 725
BsiHKAI GWGCWC 1 cut(s) 1472
BsiSI CCGG 1 cut(s) 774
BslFI GGGAC 2 cut(s) 153, 1304
BslI CCNNNNNNNGG 4 cut(s) 184, 721, 1181, 1456
BsmAI GTCTC 2 cut(s) 206, 611
BsmFI GGGAC 2 cut(s) 153, 1304
BsmI GAATGC 1 cut(s) 1111
BsnI GGCC 2 cut(s) 491, 725
Bsp119I TTCGAA 2 cut(s) 131, 849
Bsp1286I GDGCHC 2 cut(s) 447, 1472
Bsp1407I TGTACA 1 cut(s) 1086
Bsp143I GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
BspACI CCGC 2 cut(s) 587, 1182
BspANI GGCC 2 cut(s) 491, 725
BspCNI CTCAG 3 cut(s) 634, 729, 925
BspHI TCATGA 2 cut(s) 64, 223
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 2 cut(s) 12, 1384
BspT104I TTCGAA 2 cut(s) 131, 849
BsrDI GCAATG 1 cut(s) 1209
BsrFI RCCGGY 1 cut(s) 773
BsrGI TGTACA 1 cut(s) 1086
BsrI ACTGG 2 cut(s) 141, 218
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 8, 238
BssMI GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
BssT1I CCWWGG 2 cut(s) 8, 238
Bst2UI CCWGG 3 cut(s) 158, 460, 1179
Bst4CI ACNGT 5 cut(s) 115, 734, 942, 1150, 1318
Bst6I CTCTTC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 1086
BstBI TTCGAA 2 cut(s) 131, 849
BstC8I GCNNGC 2 cut(s) 433, 1226
BstDEI CTNAG 4 cut(s) 642, 716, 912, 1386
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 4 cut(s) 301, 332, 1201, 1465
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 6 cut(s) 7, 310, 654, 1069, 1273, 1379
BstMAI GTCTC 2 cut(s) 206, 611
BstMBI GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
BstMWI GCNNNNNNNGC 4 cut(s) 30, 395, 578, 587
BstNI CCWGG 3 cut(s) 158, 460, 1179
BstNSI RCATGY 2 cut(s) 318, 862
BstSCI CCNGG 3 cut(s) 156, 458, 1177
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 447
BstV2I GAAGAC 2 cut(s) 570, 1035
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 491, 725
BtsCI GGATG 4 cut(s) 301, 332, 1201, 1465
BtsI GCAGTG 1 cut(s) 1057
BtsIMutI CAGTG 3 cut(s) 739, 1057, 1331
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 2 cut(s) 433, 1226
CciI TCATGA 2 cut(s) 64, 223
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 458
Csp6I GTAC 5 cut(s) 205, 646, 804, 950, 1087
CviAII CATG 8 cut(s) 65, 151, 224, 315, 859, 1264, 1274, 1287
CviQI GTAC 5 cut(s) 205, 646, 804, 950, 1087
DdeI CTNAG 4 cut(s) 642, 716, 912, 1386
DpnI GATC 6 cut(s) 6, 309, 653, 1068, 1272, 1378
DpnII GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 1470
Eco130I CCWWGG 2 cut(s) 8, 238
Eco24I GRGCYC 1 cut(s) 1472
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 1470
Eco57I CTGAAG 1 cut(s) 737
EcoICRI GAGCTC 1 cut(s) 1470
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 156, 458, 1177
EcoT14I CCWWGG 2 cut(s) 8, 238
EcoT38I GRGCYC 1 cut(s) 1472
ErhI CCWWGG 2 cut(s) 8, 238
FaeI CATG 8 cut(s) 68, 154, 227, 318, 862, 1267, 1277, 1290
FaqI GGGAC 2 cut(s) 153, 1304
FatI CATG 8 cut(s) 64, 150, 223, 314, 858, 1263, 1273, 1286
FbaI TGATCA 3 cut(s) 307, 651, 1270
FokI GGATG 4 cut(s) 308, 319, 1208, 1472
FriOI GRGCYC 1 cut(s) 1472
FspBI CTAG 2 cut(s) 1127, 1338
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 1 cut(s) 87
GsuI CTGGAG 4 cut(s) 179, 201, 567, 1161
HaeIII GGCC 2 cut(s) 491, 725
HapII CCGG 1 cut(s) 774
HhaI GCGC 1 cut(s) 88
Hin1II CATG 8 cut(s) 68, 154, 227, 318, 862, 1267, 1277, 1290
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 4 cut(s) 101, 214, 851, 1419
HpaII CCGG 1 cut(s) 774
HphI GGTGA 4 cut(s) 408, 791, 804, 1280
Hpy166II GTNNAC 2 cut(s) 812, 1005
Hpy188I TCNGA 5 cut(s) 359, 633, 756, 856, 1459
Hpy188III TCNNGA 5 cut(s) 65, 224, 256, 936, 1193
Hpy8I GTNNAC 2 cut(s) 812, 1005
HpyAV CCTTC 3 cut(s) 68, 115, 531
HpyCH4III ACNGT 5 cut(s) 115, 734, 942, 1150, 1318
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 395, 578, 587
HpyF3I CTNAG 4 cut(s) 642, 716, 912, 1386
Hsp92II CATG 8 cut(s) 68, 154, 227, 318, 862, 1267, 1277, 1290
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 3 cut(s) 307, 651, 1270
Kzo9I GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
LmnI GCTCC 2 cut(s) 586, 1199
LweI GCATC 3 cut(s) 341, 776, 1357
MabI ACCWGGT 1 cut(s) 458
MaeI CTAG 2 cut(s) 1127, 1338
MaeIII GTNAC 4 cut(s) 462, 796, 839, 1150
MalI GATC 6 cut(s) 6, 309, 653, 1068, 1272, 1378
MboI GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
MboII GAAGA 5 cut(s) 575, 623, 743, 819, 1035
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 447, 1472
MlyI GAGTC 1 cut(s) 208
MseI TTAA 4 cut(s) 168, 321, 675, 1139
MslI CAYNNNNRTG 3 cut(s) 69, 794, 1266
MspA1I CMGCKG 2 cut(s) 98, 587
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 3 cut(s) 158, 460, 1179
Mva1269I GAATGC 1 cut(s) 1111
MvaI CCWGG 3 cut(s) 158, 460, 1179
MwoI GCNNNNNNNGC 4 cut(s) 30, 395, 578, 587
NdeII GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
NlaIII CATG 8 cut(s) 68, 154, 227, 318, 862, 1267, 1277, 1290
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 1303
NmuCI GTSAC 1 cut(s) 796
NsbI TGCGCA 1 cut(s) 87
NspI RCATGY 2 cut(s) 318, 862
NspV TTCGAA 2 cut(s) 131, 849
OliI CACNNNNGTG 2 cut(s) 794, 1266
PagI TCATGA 2 cut(s) 64, 223
PciI ACATGT 2 cut(s) 314, 858
PctI GAATGC 1 cut(s) 1111
PfeI GAWTC 3 cut(s) 101, 851, 1419
PflFI GACNNNGTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 156
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 2 cut(s) 314, 858
PshBI ATTAAT 2 cut(s) 321, 675
Psp124BI GAGCTC 1 cut(s) 1472
Psp6I CCWGG 3 cut(s) 156, 458, 1177
PspGI CCWGG 3 cut(s) 156, 458, 1177
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 5 cut(s) 206, 647, 805, 951, 1088
RsaNI GTAC 5 cut(s) 205, 646, 804, 950, 1087
RseI CAYNNNNRTG 3 cut(s) 69, 794, 1266
SacI GAGCTC 1 cut(s) 1472
SaqAI TTAA 4 cut(s) 168, 321, 675, 1139
Sau3AI GATC 6 cut(s) 4, 307, 651, 1066, 1270, 1376
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 2 cut(s) 647, 805
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 3 cut(s) 158, 460, 1179
SduI GDGCHC 2 cut(s) 447, 1472
SexAI ACCWGGT 1 cut(s) 458
SfaNI GCATC 3 cut(s) 341, 776, 1357
SfcI CTRYAG 1 cut(s) 470
SfuI TTCGAA 2 cut(s) 131, 849
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 3 cut(s) 69, 794, 1266
SmlI CTYRAG 2 cut(s) 209, 282
SmoI CTYRAG 2 cut(s) 209, 282
SpeI ACTAGT 1 cut(s) 1126
SsiI CCGC 2 cut(s) 587, 1182
SspI AATATT 2 cut(s) 624, 762
SspMI CTAG 2 cut(s) 1127, 1338
SstI GAGCTC 1 cut(s) 1472
StyD4I CCNGG 3 cut(s) 156, 458, 1177
StyI CCWWGG 2 cut(s) 8, 238
TaaI ACNGT 5 cut(s) 115, 734, 942, 1150, 1318
TaqI TCGA 5 cut(s) 54, 131, 849, 1046, 1218
TatI WGTACW 3 cut(s) 645, 803, 1086
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 3 cut(s) 101, 851, 1419
Tru1I TTAA 4 cut(s) 168, 321, 675, 1139
Tru9I TTAA 4 cut(s) 168, 321, 675, 1139
TscAI CASTG 3 cut(s) 739, 1064, 1331
TseFI GTSAC 1 cut(s) 796
Tsp45I GTSAC 1 cut(s) 796
TspGWI ACGGA 1 cut(s) 697
TspRI CASTG 3 cut(s) 739, 1064, 1331
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 154
VspI ATTAAT 2 cut(s) 321, 675
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 3 cut(s) 47, 412, 1453
XceI RCATGY 2 cut(s) 318, 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XspI CTAG 2 cut(s) 1127, 1338
ZrmI AGTACT 2 cut(s) 647, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.