RLG00000029500

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000496
Physical Location & Seq
Forward (+)
39567636 .. 39570520
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029500

Sequence Viewer

Length: 633 bp
ATGGATTTCTTTGGTTGTCGAGACCGTTATAGTAATAACATCCTACATCTTGCAGTTTCTGAAGCGCAGCATAAGATAGCAGAGTACCTAATCATCGAAAAAAAAGTGGACCTCAACTCTAGAAACAATGAAGGACTGACAGCCCTTAACCTCCTCAAACAGAGCAAAGAAAGTGTAGACAATCAGCGTCTTGAAGCCATGCTAATGAAAGCAGGAGAGTATGAACTGCAGTTGTCCATCATAAATGAAATAACTTCTGCTGCATCCAAATCCACATCAAGATCATCAGCACCTATGTCCCTAATGTCATCACCGTTTCCATCACCCCAATCCATCAAGTCTTCACCAAAGCTGCCATCACTGCAATCTAGCAAGTCATCGCCTAAGCTGCCATCACCACCATCTAGCAAGTTATCGCCTCAGCTTCAGGTTAATTTTGTTGAATCAAGGTTTGCATCCAATAATTTCCGCACAGTCAGGTATGCAGTTGTTACAGGTTCAAATCAGGGGATTCGGTTTGGAACAGTTGAGCGGTTGGCTTCAAATGAGATCATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCAGTTGAAGAATTAAAAGACTCTGACCTCAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

211

Amino Acids

23.2

Weight (kDa)

8.92

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 532
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 469, 532
AcuI CTGAAG 2 cut(s) 81, 410
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 6 cut(s) 194, 443, 501, 543, 593, 602
AluBI AGCT 4 cut(s) 352, 388, 424, 569
AluI AGCT 4 cut(s) 352, 388, 424, 569
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 59
ApeKI GCWGC 4 cut(s) 67, 260, 352, 388
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 4 cut(s) 303, 315, 336, 387
AvaII GGWCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 79, 247, 339, 375
BccI CCATC 6 cut(s) 245, 328, 341, 364, 400, 409
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 3 cut(s) 120, 369, 405
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 4 cut(s) 68, 261, 353, 389
BlsI GCNGC 4 cut(s) 69, 262, 354, 390
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmsI GCATC 2 cut(s) 272, 464
BpiI GAAGAC 1 cut(s) 333
Bpu10I CCTNAGC 2 cut(s) 384, 420
BsaI GGTCTC 1 cut(s) 15
BseGI GGATG 3 cut(s) 39, 263, 455
BseMII CTCAG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 4 cut(s) 79, 247, 339, 375
BslFI GGGAC 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 281, 549
BspACI CCGC 2 cut(s) 469, 532
BspCNI CTCAG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 552
BspMAI CTGCAG 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 532
BssMI GATC 2 cut(s) 281, 549
Bst4CI ACNGT 5 cut(s) 26, 315, 475, 526, 559
BstDEI CTNAG 2 cut(s) 384, 420
BstF5I GGATG 3 cut(s) 39, 263, 455
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 284, 552
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 281, 549
BstMWI GCNNNNNNNGC 2 cut(s) 361, 388
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 79, 247, 339, 375
BstV2I GAAGAC 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 3 cut(s) 39, 263, 455
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 359, 564
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 199, 553
CviJI RGCY 7 cut(s) 143, 197, 352, 388, 424, 539, 569
CviKI_1 RGCY 7 cut(s) 143, 197, 352, 388, 424, 539, 569
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 384, 420
DpnI GATC 2 cut(s) 283, 551
DpnII GATC 2 cut(s) 281, 549
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 81, 410
FaeI CATG 2 cut(s) 202, 556
FaiI YATR 8 cut(s) 30, 72, 200, 222, 242, 296, 483, 554
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 198, 552
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 68, 261, 353, 389
FokI GGATG 3 cut(s) 26, 250, 442
Fsp4HI GCNGC 4 cut(s) 68, 261, 353, 389
FspBI CTAG 3 cut(s) 120, 369, 405
GlaI GCGC 1 cut(s) 66
GluI GCNGC 4 cut(s) 68, 261, 353, 389
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 202, 556
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 3 cut(s) 443, 511, 614
HpaI GTTAAC 1 cut(s) 564
HphI GGTGA 4 cut(s) 303, 315, 336, 387
Hpy166II GTNNAC 3 cut(s) 109, 178, 564
Hpy188I TCNGA 2 cut(s) 61, 619
Hpy188III TCNNGA 5 cut(s) 20, 120, 191, 279, 553
Hpy8I GTNNAC 3 cut(s) 109, 178, 564
HpyAV CCTTC 2 cut(s) 125, 577
HpyCH4III ACNGT 5 cut(s) 26, 315, 475, 526, 559
HpyCH4V TGCA 6 cut(s) 53, 229, 263, 364, 455, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 388
HpyF3I CTNAG 2 cut(s) 384, 420
Hsp92II CATG 2 cut(s) 202, 556
HspAI GCGC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 281, 549
LpnPI CCDG 5 cut(s) 198, 413, 463, 480, 491
Lsp1109I GCAGC 4 cut(s) 79, 247, 339, 375
LweI GCATC 2 cut(s) 272, 464
MaeI CTAG 3 cut(s) 120, 369, 405
MaeIII GTNAC 1 cut(s) 490
MalI GATC 2 cut(s) 283, 551
MbiI CCGCTC 1 cut(s) 532
MboI GATC 2 cut(s) 281, 549
MboII GAAGA 3 cut(s) 333, 592, 614
MluCI AATT 3 cut(s) 433, 463, 605
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 5 cut(s) 122, 161, 164, 429, 632
MseI TTAA 4 cut(s) 147, 432, 563, 608
MslI CAYNNNNRTG 2 cut(s) 203, 557
MwoI GCNNNNNNNGC 2 cut(s) 361, 388
NdeII GATC 2 cut(s) 281, 549
NlaIII CATG 2 cut(s) 202, 556
PagI TCATGA 1 cut(s) 552
PfeI GAWTC 2 cut(s) 443, 511
PkrI GCNGC 4 cut(s) 69, 262, 354, 390
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 2 cut(s) 203, 557
SaqAI TTAA 4 cut(s) 147, 432, 563, 608
SatI GCNGC 4 cut(s) 68, 261, 353, 389
Sau3AI GATC 2 cut(s) 281, 549
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 608
SfaNI GCATC 2 cut(s) 272, 464
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 203, 557
Sse9I AATT 3 cut(s) 433, 463, 605
SsiI CCGC 2 cut(s) 469, 532
SspMI CTAG 3 cut(s) 120, 369, 405
TaaI ACNGT 5 cut(s) 26, 315, 475, 526, 559
TaqI TCGA 2 cut(s) 19, 96
TasI AATT 3 cut(s) 433, 463, 605
TfiI GAWTC 2 cut(s) 443, 511
Tru1I TTAA 4 cut(s) 147, 432, 563, 608
Tru9I TTAA 4 cut(s) 147, 432, 563, 608
TscAI CASTG 2 cut(s) 366, 564
TseI GCWGC 4 cut(s) 67, 260, 352, 388
TspDTI ATGAA 4 cut(s) 144, 221, 237, 261
TspRI CASTG 2 cut(s) 366, 564
VpaK11BI GGWCC 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 3 cut(s) 120, 369, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.