Rh2AG410100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000496
Physical Location & Seq
Forward (+)
60873372 .. 60873983
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG410100.1

Sequence Viewer

Length: 612 bp
ATGAGTACTGAGATTTTCTACAACCGGCGCAGGAAGCATGAAAAGGTGTACACAGGGGTACTGCAGAATGCCAGGAACACCATAACACTAGTTGCCATTTTGATTGCAACGGTTACTTTTGCTGCTGGTATTAGTCCCCCGGGTGGTGTTTATCAGGACGGATTTATGAAAGGGAAGTCGATAGCAGGAACAACAACTGCTTTCAAGGTGTTTGAAATAAGCAATTATGTCGCACTATTCACATCACTCTCGATAGTTGTTGTTCTTGTGAGTATCATTCCATATCAGAGAAAGCCATTGATAAGATTGTTGAGGGTTGCTCATAAGGTAATGTGGGTAGCTGTGGCATTCATGGCAAAAGGGTATGTTGCAGCCACATGGGTTATCATGCAACAAAATCAGAAAAATGAATTGTTGTTTGTAGCCTTTTTGACCATAAGCAATGGAATTCTGGGAACAGTTTTCATTTGGATAGGTATTATGCTAGTTGTTCCTTGCCTGCGAAAGTCGAAGTGGAGGAAGGGAAGAAGAGAAATTGGGGAGGCTGATGAGGACCCTGAAATGGGAAGCCAAAACTCAGATGTTGATAGCACATACAATCATTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

9.83

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 21 - 128 4.4e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10340 AT1G10340 AT1G34046 AT1G34050 AT2G24600 AT2G24600 AT2G24600 AT2G24600 AT3G52830 AT5G54700 AT5G54700
fragaria_vesca FvH4_6g32091 FvH4_6g32100 FvH4_6g32100 FvH4_6g32121
malus_domestica MD17G1186800.v1.1 MD17G1187000.v1.1
prunus_persica Prupe.3G061900_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062300_v2.0.a1 Prupe.3G062400_v2.0.a1 Prupe.3G065300_v2.0.a1
pyrus_communis pycom17g19590
rosa_chinensis RchiOBHm_Chr1g0353591 RchiOBHm_Chr2g0139761 RchiOBHm_Chr2g0139771 RchiOBHm_Chr2g0139841 RchiOBHm_Chr2g0139851 RchiOBHm_Chr2g0139911
rosa_laevigata RLG00000019831 RLG00000019832 RLG00000019834 RLG00000019835 RLG00000019838 RLG00000028268 RLG00000029493 RLG00000029500 RLG00000029519 RLG00000029774
rosa_multiflora Rmu_co8197386.1_g000001 Rmu_co8359109.1_g000001 Rmu_sc0000545.1_g000005 Rmu_sc0005914.1_g000001 Rmu_sc0030896.1_g000002 Rmu_sc0030896.1_g000003 Rmu_sc0030896.1_g000004 Rmu_sc0032265.1_g000001
rosa_roxburghii Rroxscaffold_2G00105170 Rroxscaffold_2G00105210 Rroxscaffold_2G00105220 Rroxscaffold_4G00301800
rosa_rugosa Rorug01G0236400 Rorug02G0359900 Rorug02G0360000 Rorug02G0360200
rosa_samantha Rh1AG248700 Rh1BG105500 Rh1BG219100 Rh1CG231800 Rh1DG245500 Rh2AG409600 Rh2AG409700 Rh2AG410000 Rh2AG410100 Rh2AG410400 Rh2AG410500 Rh2BG420100 Rh2BG420200 Rh2BG420600 Rh2BG420700 Rh2CG395900 Rh2CG396000 Rh2CG396200 Rh2CG396500 Rh2CG396600 Rh2DG429400 Rh2DG429500 Rh2DG429800 Rh2DG430100 Rh2DG430200
rosa_wichuraiana Rw1G021690 Rw2G033350 Rw2G033400 Rw2G033410 Rw2G033570 Rw2G033620 Rw2G033630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 447
AfaI GTAC 3 cut(s) 7, 50, 60
AfiI CCNNNNNNNGG 3 cut(s) 143, 562, 563
AgsI TTSAA 2 cut(s) 205, 215
AhlI ACTAGT 1 cut(s) 88
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 122, 371
ApoI RAATTY 1 cut(s) 447
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 553
AsuC2I CCSGG 2 cut(s) 140, 141
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 109, 383
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 2 cut(s) 140, 141
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 2 cut(s) 89, 485
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 123, 372
BlsI GCNGC 2 cut(s) 124, 373
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 73, 140, 141
Bme18I GGWCC 1 cut(s) 553
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 3 cut(s) 73, 140, 141
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BpuMI CCSGG 2 cut(s) 140, 141
BsaJI CCNNGG 2 cut(s) 138, 139
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 562, 563
Bse118I RCCGGY 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 2 cut(s) 138, 139
BseLI CCNNNNNNNGG 3 cut(s) 143, 562, 563
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 591
BseXI GCAGC 2 cut(s) 109, 383
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 25, 140
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 3 cut(s) 143, 562, 563
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 2 cut(s) 73, 347
BsoBI CYCGRG 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 590
BspLI GGNNCC 1 cut(s) 555
BspMAI CTGCAG 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 138, 139
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 112, 460
Bst6I CTCTTC 1 cut(s) 523
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 2 cut(s) 9, 577
BstHHI GCGC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 34, 353
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 71, 138, 139
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 109, 383
Cac8I GCNNGC 1 cut(s) 500
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 553
Cfr9I CCCGGG 1 cut(s) 139
Csp6I GTAC 3 cut(s) 6, 49, 59
CviAII CATG 4 cut(s) 38, 352, 378, 388
CviJI RGCY 6 cut(s) 295, 341, 374, 425, 545, 570
CviKI_1 RGCY 6 cut(s) 295, 341, 374, 425, 545, 570
CviQI GTAC 3 cut(s) 6, 49, 59
DdeI CTNAG 2 cut(s) 9, 577
Eam1104I CTCTTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 71
FaeI CATG 4 cut(s) 41, 355, 381, 391
FaqI GGGAC 1 cut(s) 120
FatI CATG 4 cut(s) 37, 351, 377, 387
Fnu4HI GCNGC 2 cut(s) 123, 372
Fsp4HI GCNGC 2 cut(s) 123, 372
FspBI CTAG 2 cut(s) 89, 485
GlaI GCGC 1 cut(s) 29
GluI GCNGC 2 cut(s) 123, 372
HapII CCGG 2 cut(s) 25, 140
HhaI GCGC 1 cut(s) 30
Hin1II CATG 4 cut(s) 41, 355, 381, 391
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HpaII CCGG 2 cut(s) 25, 140
Hpy166II GTNNAC 2 cut(s) 49, 51
Hpy188I TCNGA 3 cut(s) 288, 402, 580
Hpy188III TCNNGA 2 cut(s) 155, 250
Hpy8I GTNNAC 2 cut(s) 49, 51
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 2 cut(s) 112, 460
HpyCH4V TGCA 4 cut(s) 64, 107, 371, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 353
HpyF3I CTNAG 2 cut(s) 9, 577
Hsp92II CATG 4 cut(s) 41, 355, 381, 391
HspAI GCGC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 109, 383
MaeI CTAG 2 cut(s) 89, 485
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 2 cut(s) 537, 540
MluCI AATT 4 cut(s) 223, 410, 447, 534
MnlI CCTC 4 cut(s) 306, 510, 535, 544
MspI CCGG 2 cut(s) 25, 140
MspR9I CCNGG 3 cut(s) 73, 140, 141
Mva1269I GAATGC 2 cut(s) 73, 347
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 34, 353
NciI CCSGG 2 cut(s) 140, 141
NlaIII CATG 4 cut(s) 41, 355, 381, 391
NlaIV GGNNCC 1 cut(s) 555
PctI GAATGC 2 cut(s) 73, 347
PkrI GCNGC 2 cut(s) 124, 373
PpuMI RGGWCCY 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 1 cut(s) 553
PspPPI RGGWCCY 1 cut(s) 553
PstI CTGCAG 1 cut(s) 66
RsaI GTAC 3 cut(s) 7, 50, 60
RsaNI GTAC 3 cut(s) 6, 49, 59
SatI GCNGC 2 cut(s) 123, 372
Sau96I GGNCC 1 cut(s) 553
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 3 cut(s) 73, 140, 141
SetI ASST 5 cut(s) 48, 210, 330, 343, 478
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 553
SmaI CCCGGG 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 88
Sse9I AATT 4 cut(s) 223, 410, 447, 534
SspMI CTAG 2 cut(s) 89, 485
StyD4I CCNGG 3 cut(s) 71, 138, 139
TaaI ACNGT 2 cut(s) 112, 460
TaqI TCGA 3 cut(s) 179, 251, 509
TasI AATT 4 cut(s) 223, 410, 447, 534
TatI WGTACW 2 cut(s) 5, 48
TseI GCWGC 2 cut(s) 122, 371
TspDTI ATGAA 6 cut(s) 54, 182, 340, 423, 454, 594
TspGWI ACGGA 1 cut(s) 174
TspMI CCCGGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 1 cut(s) 447
XmaI CCCGGG 1 cut(s) 139
XspI CTAG 2 cut(s) 89, 485
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.