Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

16887217 .. 16889155

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G44740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTGATTAGGAGAATCAAACGATTTCTCGGCTTAAAACCCGGAAACCAAAGACGGAAACAGGTGATAAGAGTTCTTACCATGACGGAGGAGGGTGAGATAAATGTTCTCTCCATAAAGGAGGAGGGTGAGATAAATGTTCTCTCCACAAAGGAGGAAGGCGGAGCCAAGATGGAAGCCAAATACAAGACTAAAAAACTTTGGGATGAGATTGTTGGAGTGAGATTGTATGACTTGCTTCCGAGTGTAAACGGTGAAGATGATATCCAACCAAATCCAATTAGATGGGAGAAGCATCGTGACGTAATCAACAATACTCGGCTGGCCAAAAGAAATAGAGAGACAGACCTAGGCCAAGGAGAGGTCGACAGTTTCAAGCTCCACAACAGTATCAAGTTTTCCTGTGGCTCAAAGATGAGGCGTCGGAGGTACAATGTAAGCACATGTGGAGGTGCAAGCCTTGCAATCGACGATGTCCGAGATGCGGTGAGGCAAGTCTCAGTTTTTCAAGGTGTAGTGCCGCTGGGTTATGAGCAGAGATTAGGTCAAAAGCCAAGACAAGAGATCCGAGAGGAGTTGAAGATGCAACAAAAAGGAAAGGAAGAGAACAAGTCTCGACGCCGGCAAGCAATGGCTCCGCCAGTGTTAGAAAGCATTGTTGAAAGAGGTTTTTCGATACTTGAGCCTGAGAGCGTTTTCTACCAAAAAAAAGTTCTTGCTATCAAAGGTAATGGAGCTTATACTTTTGTTGCTGACTCTACTCTTGGTTCTGTGCAGGTCTTAAAAATAGTCGGAGAGAAGTTAATGAAGACTAGTTGGAACTTCACTGTGAATCCCAGTGATGTTTCAAAGAGTGGAGTATGGAGAAATCTTACAACTCCAGAAGGATCTGAAGATATCGTATATGCAGCTGCAACAGAACTATATGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

311

Amino Acids

35.29

Weight (kDa)

9.56

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	4 cut(s)	162, 485, 521, 638
AclWI	GGATC	2 cut(s)	559, 895
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	2 cut(s)	421, 619
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	361, 484
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	376, 509, 580, 662, 849
AhlI	ACTAGT	1 cut(s)	812
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AluBI	AGCT	3 cut(s)	379, 737, 911
AluI	AGCT	3 cut(s)	379, 737, 911
Alw26I	GTCTC	3 cut(s)	335, 502, 618
AlwI	GGATC	2 cut(s)	559, 895
AoxI	GGCC	2 cut(s)	324, 352
ApeKI	GCWGC	2 cut(s)	908, 911
AspA2I	CCTAGG	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	6 cut(s)	16, 76, 107, 140, 266, 499
AvrII	CCTAGG	1 cut(s)	349
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BalI	TGGCCA	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	898, 920
BccI	CCATC	2 cut(s)	166, 279
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	335, 502, 618
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	2 cut(s)	350, 813
BfuAI	ACCTGC	1 cut(s)	766
BisI	GCNGC	3 cut(s)	521, 909, 912
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	3 cut(s)	522, 910, 913
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	166, 636
BmrFI	CCNGG	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	3 cut(s)	304, 472, 573
BmuI	ACTGGG	1 cut(s)	831
BpiI	GAAGAC	1 cut(s)	815
BpmI	CTGGAG	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	42
BsaHI	GRCGYC	2 cut(s)	421, 619
BsaJI	CCNNGG	2 cut(s)	349, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 484
Bse118I	RCCGGY	1 cut(s)	621
Bse1I	ACTGG	2 cut(s)	641, 837
Bse3DI	GCAATG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	349, 355
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	361, 484
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	513, 678
BseNI	ACTGG	2 cut(s)	641, 837
BseRI	GAGGAG	3 cut(s)	104, 137, 587
BseXI	GCAGC	2 cut(s)	898, 920
BseYI	CCCAGC	1 cut(s)	523
BsgI	GTGCAG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	326, 354
BsiSI	CCGG	2 cut(s)	42, 622
BslI	CCNNNNNNNGG	2 cut(s)	361, 484
BsmAI	GTCTC	3 cut(s)	335, 502, 618
BsnI	GGCC	2 cut(s)	326, 354
Bsp143I	GATC	2 cut(s)	564, 887
BspACI	CCGC	4 cut(s)	162, 485, 521, 638
BspANI	GGCC	2 cut(s)	326, 354
BspCNI	CTCAG	2 cut(s)	512, 679
BspLI	GGNNCC	2 cut(s)	166, 636
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	2 cut(s)	559, 895
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	641, 837
BssAI	RCCGGY	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	349, 355
BssMI	GATC	2 cut(s)	564, 887
BssNI	GRCGYC	2 cut(s)	421, 619
BssT1I	CCWWGG	2 cut(s)	349, 355
Bst4CI	ACNGT	4 cut(s)	254, 371, 389, 829
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	2 cut(s)	421, 619
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	4 cut(s)	324, 457, 623, 627
BstDEI	CTNAG	2 cut(s)	499, 687
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	567, 890
BstMAI	GTCTC	3 cut(s)	335, 502, 618
BstMBI	GATC	2 cut(s)	564, 887
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	898, 920
BstV2I	GAAGAC	1 cut(s)	815
BstX2I	RGATCY	2 cut(s)	564, 887
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	2 cut(s)	564, 887
BsuRI	GGCC	2 cut(s)	326, 354
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	648, 825, 844
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	4 cut(s)	324, 457, 623, 627
Cfr10I	RCCGGY	1 cut(s)	621
CseI	GACGC	2 cut(s)	410, 627
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	82, 444, 931
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	499, 687
DpnI	GATC	2 cut(s)	566, 889
DpnII	GATC	2 cut(s)	564, 887
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	2 cut(s)	177, 627
Eco130I	CCWWGG	2 cut(s)	349, 355
Eco32I	GATATC	2 cut(s)	265, 898
Eco57I	CTGAAG	1 cut(s)	912
EcoRV	GATATC	2 cut(s)	265, 898
EcoT14I	CCWWGG	2 cut(s)	349, 355
ErhI	CCWWGG	2 cut(s)	349, 355
FaeI	CATG	3 cut(s)	85, 447, 934
FatI	CATG	3 cut(s)	81, 443, 930
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	521, 909, 912
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	521, 909, 912
FspBI	CTAG	2 cut(s)	350, 813
GluI	GCNGC	3 cut(s)	521, 909, 912
GsaI	CCCAGC	1 cut(s)	527
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	2 cut(s)	326, 354
HapII	CCGG	2 cut(s)	42, 622
HgaI	GACGC	2 cut(s)	410, 627
Hin1I	GRCGYC	2 cut(s)	421, 619
Hin1II	CATG	3 cut(s)	85, 447, 934
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	15, 755, 832
HpaII	CCGG	2 cut(s)	42, 622
HphI	GGTGA	6 cut(s)	16, 76, 107, 140, 266, 499
Hpy166II	GTNNAC	2 cut(s)	250, 367
Hpy188I	TCNGA	6 cut(s)	243, 426, 479, 569, 794, 892
Hpy188III	TCNNGA	3 cut(s)	299, 615, 881
Hpy8I	GTNNAC	2 cut(s)	250, 367
Hpy99I	CGWCG	3 cut(s)	426, 473, 621
HpyAV	CCTTC	2 cut(s)	152, 878
HpyCH4III	ACNGT	4 cut(s)	254, 371, 389, 829
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	6 cut(s)	455, 464, 586, 775, 908, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	499, 687
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	2 cut(s)	421, 619
Hsp92II	CATG	3 cut(s)	85, 447, 934
KroI	GCCGGC	1 cut(s)	621
KroNI	GCCGGC	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	564, 887
LmnI	GCTCC	4 cut(s)	164, 384, 640, 734
Lsp1109I	GCAGC	2 cut(s)	898, 920
LweI	GCATC	3 cut(s)	304, 472, 573
MaeI	CTAG	2 cut(s)	350, 813
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	2 cut(s)	566, 889
MboI	GATC	2 cut(s)	564, 887
MboII	GAAGA	5 cut(s)	269, 592, 614, 820, 905
MflI	RGATCY	2 cut(s)	564, 887
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	5 cut(s)	196, 292, 404, 772, 797
Mox20I	TGGCCA	1 cut(s)	326
MroNI	GCCGGC	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	35, 782, 803
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	523, 911
MspI	CCGG	2 cut(s)	42, 622
MspR9I	CCNGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	461
NaeI	GCCGGC	1 cut(s)	623
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	564, 887
NgoMIV	GCCGGC	1 cut(s)	621
NlaIII	CATG	3 cut(s)	85, 447, 934
NlaIV	GGNNCC	2 cut(s)	166, 636
NmeAIII	GCCGAG	2 cut(s)	9, 298
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	447
PciI	ACATGT	1 cut(s)	443
PdiI	GCCGGC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	15, 832
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	522, 910, 913
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PscI	ACATGT	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	166, 636
PsuI	RGATCY	2 cut(s)	564, 887
PsyI	GACNNNGTC	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	35, 782, 803
SatI	GCNGC	3 cut(s)	521, 909, 912
Sau3AI	GATC	2 cut(s)	564, 887
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	304, 472, 573
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	4 cut(s)	162, 485, 521, 638
SspMI	CTAG	2 cut(s)	350, 813
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	349, 355
TaaI	ACNGT	4 cut(s)	254, 371, 389, 829
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	4 cut(s)	366, 468, 616, 674
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	15, 832
Tru1I	TTAA	3 cut(s)	35, 782, 803
Tru9I	TTAA	3 cut(s)	35, 782, 803
TscAI	CASTG	3 cut(s)	648, 832, 844
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	908, 911
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	821
TspGWI	ACGGA	2 cut(s)	70, 101
TspRI	CASTG	3 cut(s)	648, 832, 844
Tth111I	GACNNNGTC	1 cut(s)	473
XceI	RCATGY	1 cut(s)	447
XmaJI	CCTAGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	350, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.