Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8169922.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 642

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8169922.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ctgaaagaaatagctacacaaataggaaagaaggattggaactttagcgtcgacccttgcagcaatgacacgagctgggccaccccaatatctgctgccaggcctctgttcaacaacactgtcacctgcaactgctccttctctgatggtgcatgccacgtcaccaacatctttcttaaagggcaagaccttgctggtgtgcttccaccgtctattgcaaagttaccctacctgataaatgtcgatttcacaaggaactacctaaatggcagcataccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

93

Amino Acids

10.12

Weight (kDa)

6.73

Isoelectric Point (pI)

17.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	2 cut(s)	14, 75
AluI	AGCT	2 cut(s)	14, 75
AoxI	GGCC	2 cut(s)	78, 101
ApeKI	GCWGC	3 cut(s)	60, 95, 270
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	115, 154
BauI	CACGAG	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	72, 82
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	61, 96, 271
BlsI	GCNGC	3 cut(s)	62, 97, 272
Bme1390I	CCNGG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	72, 82
BseYI	CCCAGC	1 cut(s)	75
BshFI	GGCC	2 cut(s)	80, 103
BsnI	GGCC	2 cut(s)	80, 103
BspANI	GGCC	2 cut(s)	80, 103
BspMI	ACCTGC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	121, 210
BstC8I	GCNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	72, 82
BsuRI	GGCC	2 cut(s)	80, 103
BtrI	CACGTC	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	37
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	14, 75, 80, 103
CviKI_1	RGCY	4 cut(s)	14, 75, 80, 103
Eco147I	AGGCCT	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	156
FaiI	YATR	2 cut(s)	154, 275
FatI	CATG	1 cut(s)	152
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	61, 96, 271
Fsp4HI	GCNGC	3 cut(s)	61, 96, 271
GluI	GCNGC	3 cut(s)	61, 96, 271
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	80, 103
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HphI	GGTGA	2 cut(s)	115, 154
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	25, 148
HpyCH4III	ACNGT	2 cut(s)	121, 210
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	60, 129, 152, 218
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	61, 85, 112, 139, 180, 245
Lsp1109I	GCAGC	2 cut(s)	72, 82
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	121, 160, 222
MnlI	CCTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
NlaIII	CATG	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	121, 160
NspI	RCATGY	1 cut(s)	156
PaeI	GCATGC	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	62, 97, 272
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	78
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	3 cut(s)	61, 96, 271
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	7 cut(s)	16, 77, 128, 162, 192, 234, 264
SphI	GCATGC	1 cut(s)	156
SseBI	AGGCCT	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	121, 210
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	51, 243
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	121, 160
TseI	GCWGC	3 cut(s)	60, 95, 270
Tsp45I	GTSAC	2 cut(s)	121, 160
TspRI	CASTG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.