MD05G1294400.v1.1

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
42682888 .. 42686913
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1294400.v1.1.491

Sequence Viewer

Length: 1380 bp
ATGGAATGTGATTATGTGAAGAAAATGGCAGCAAGTCAAAACCTTTCAAAGTTGTTCTTCTGCTATGTTGTTCTACTTACAGTACTTATCTGCATTGAGCCAATCAAATCCCAGGAACAGGTGGGCACTCTTGCAGACGATGAAGTGGAAGCACTTCGTGAAATAGCTGTGCAATTGAATAAAAAGGATTGGAATTTCAGTGATCCTTGTAGCAATATTCCGACTATTTCAATCCCGCGTACGGATGAGTACAACAACACTCTCGTCTGCAACTGCTCTTTCTCTGGCAATGTATGCCACATCCAAAGCATTTTTCTTACCGGACAGGACCTTGATGGTGTGCTTCCGCCAGCACTGTTGAAGCTACCTTACCTTAAGCAAGTTAATTTGGCCAGGAATTACCTTAGTGGTTCAATACCGAGCGAATGGAATTCTACGAAGTTGGAACTTCTGGTTCTCAGTGTGAACAACTTATCAGGACCCATTCCTGGTTATTTGGGAAGCATAACTACTCTGCACTCTCTGGCCTTGGAGAGCAACTTATTTTCTGGAACTCTTCCCCCGGAATTGGGCAATTTGGTTAACCTGGAGCTTCTCTATCTTCGTGCTAACAATCTCACTGGTGAGCTGCCTTCAGCCCTCACTAAAATGACCAAATTAAGAGTACTTCAGATTGGCAGTAATAACTTCACTGGAAGAATACCTGACTACTTTCGAAGTTGGAAAAACCTCCAGGCCTTAGAGATGCAAGCGAGTGGTCTTGAAGGCCCCCTTCCATCTAGTCTCTCTGCCTTGAATAATATGACAGATCTAAGGATTAGTGACTTAAGCGGTGAGAGTTCAGCTTTTCCAAACTTATCAAGCATGACGGGCATTAATAAATTGATGTTAAGGAGCTGCAATATAACAGGAGAAATGCCTGAATATATCTCTTCCATGAGAAGTCTGACTGATTTAGATCTTAGCTTCAACAGATTGGAAGGGAGTATTCCAAATTTTGCAGATATTATGGAATTGGCCACAATATATCTGACAAGCAACTTGCTAACTGGTCTTCCAGAGTGGATTAAAAATAGAGACAGTCGCTACAATATAGATCTTTCTTACAATACTTTTCCTCAGAACTCTGTCCCAAATTCTTGTCGAGAGACCTTCAATTTGTTCAGAAGTTTTTCCAGTCGGAACAATTCGATACTTAGCAATTGCCTCTTTCCATGTTCAAAAGATCGGTACTCGTTACATCTAAATTGCGGTGGAAATCAAACCACAGTCGGAAACATCAAGTATGAGGCAGATGACGCCTCAGGAGGTGCAGCAAAGTTTTTTCAGAACTCAGCAAATTGGGGATTTAGTAGTACTGGTGATTTTGCAGATGTTTAG

Protein Analysis

460

Amino Acids

50.68

Weight (kDa)

4.99

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 164 - 357 6.3e-12 Leucine-rich repeat region
LRR_8 PF13855 195 - 250 6.5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 4 cut(s) 236, 347, 831, 1251
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 2 cut(s) 390, 1017
AcsI RAATTY 4 cut(s) 193, 430, 994, 1135
AcuI CTGAAG 2 cut(s) 618, 653
AcyI GRCGYC 1 cut(s) 1299
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 6 cut(s) 84, 241, 251, 666, 1232, 1357
AfiI CCNNNNNNNGG 5 cut(s) 118, 241, 488, 568, 569
AflII CTTAAG 2 cut(s) 374, 826
AjnI CCWGG 5 cut(s) 111, 392, 487, 585, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 7 cut(s) 167, 364, 592, 628, 845, 897, 966
AluI AGCT 7 cut(s) 167, 364, 592, 628, 845, 897, 966
Alw26I GTCTC 3 cut(s) 788, 1071, 1142
AlwI GGATC 1 cut(s) 197
AoxI GGCC 5 cut(s) 390, 525, 735, 766, 1017
ApeKI GCWGC 4 cut(s) 29, 628, 897, 1313
ApoI RAATTY 4 cut(s) 193, 430, 994, 1135
ArsI GACNNNNNNTTYG 2 cut(s) 1141, 1173
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 2 cut(s) 153, 1171
AspS9I GGNCC 3 cut(s) 328, 479, 767
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 3 cut(s) 635, 845, 1373
AsuII TTCGAA 1 cut(s) 715
AvaII GGWCC 2 cut(s) 328, 479
AxyI CCTNAGG 1 cut(s) 1303
BaeGI GKGCMC 1 cut(s) 128
BalI TGGCCA 2 cut(s) 392, 1019
BarI GAAGNNNNNNTAC 4 cut(s) 353, 385, 493, 525
BbsI GAAGAC 1 cut(s) 1046
BbvI GCAGC 4 cut(s) 41, 615, 884, 1325
BccI CCATC 2 cut(s) 329, 784
BciT130I CCWGG 5 cut(s) 113, 394, 489, 587, 734
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 3 cut(s) 788, 1071, 1142
BfaI CTAG 1 cut(s) 780
BfrI CTTAAG 2 cut(s) 374, 826
BglII AGATCT 3 cut(s) 808, 958, 1096
BisI GCNGC 4 cut(s) 30, 629, 898, 1314
BlsI GCNGC 4 cut(s) 31, 630, 899, 1315
BmcAI AGTACT 3 cut(s) 84, 666, 1357
Bme1390I CCNGG 6 cut(s) 113, 394, 489, 563, 587, 734
Bme18I GGWCC 2 cut(s) 328, 479
BmgT120I GGNCC 3 cut(s) 328, 479, 767
BmiI GGNNCC 2 cut(s) 481, 769
BmrFI CCNGG 6 cut(s) 113, 394, 489, 563, 587, 734
BmsI GCATC 1 cut(s) 735
BpiI GAAGAC 1 cut(s) 1046
BpmI CTGGAG 2 cut(s) 608, 716
Bpu14I TTCGAA 1 cut(s) 715
BpuMI CCSGG 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 1299
BsaI GGTCTC 1 cut(s) 1142
BsaJI CCNNGG 3 cut(s) 111, 528, 561
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 241, 488, 568, 569
Bse1I ACTGG 5 cut(s) 625, 697, 1054, 1176, 1363
Bse21I CCTNAGG 1 cut(s) 1303
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 5 cut(s) 113, 394, 489, 587, 734
BseDI CCNNGG 3 cut(s) 111, 528, 561
BseGI GGATG 2 cut(s) 250, 300
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 5 cut(s) 118, 241, 488, 568, 569
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 4 cut(s) 472, 1133, 1317, 1347
BseNI ACTGG 5 cut(s) 625, 697, 1054, 1176, 1363
BseSI GKGCMC 1 cut(s) 128
BseXI GCAGC 4 cut(s) 41, 615, 884, 1325
BsgI GTGCAG 2 cut(s) 500, 1332
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 5 cut(s) 392, 527, 737, 768, 1019
BsiSI CCGG 2 cut(s) 321, 563
BsiWI CGTACG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 5 cut(s) 118, 241, 488, 568, 569
BsmAI GTCTC 3 cut(s) 788, 1071, 1142
BsmFI GGGAC 1 cut(s) 1115
BsnI GGCC 5 cut(s) 392, 527, 737, 768, 1019
Bso31I GGTCTC 1 cut(s) 1142
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 5 cut(s) 202, 808, 958, 1096, 1225
BspACI CCGC 4 cut(s) 236, 347, 831, 1251
BspANI GGCC 5 cut(s) 392, 527, 737, 768, 1019
BspCNI CTCAG 4 cut(s) 471, 1132, 1316, 1346
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 481, 769
BspPI GGATC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 715
BspTI CTTAAG 2 cut(s) 374, 826
BspTNI GGTCTC 1 cut(s) 1142
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 5 cut(s) 625, 697, 1054, 1176, 1363
BssECI CCNNGG 3 cut(s) 111, 528, 561
BssMI GATC 5 cut(s) 202, 808, 958, 1096, 1225
BssNI GRCGYC 1 cut(s) 1299
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 5 cut(s) 113, 394, 489, 587, 734
Bst4CI ACNGT 4 cut(s) 82, 357, 1082, 1270
Bst6I CTCTTC 2 cut(s) 561, 937
BstACI GRCGYC 1 cut(s) 1299
BstAFI CTTAAG 2 cut(s) 374, 826
BstAPI GCANNNNNTGC 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 351, 750
BstDEI CTNAG 9 cut(s) 404, 458, 739, 812, 962, 1119, 1196, 1303, 1333
BstF5I GGATG 2 cut(s) 250, 300
BstFNI CGCG 1 cut(s) 238
BstKTI GATC 5 cut(s) 205, 811, 961, 1099, 1228
BstMAI GTCTC 3 cut(s) 788, 1071, 1142
BstMBI GATC 5 cut(s) 202, 808, 958, 1096, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 294, 870, 1298
BstNI CCWGG 5 cut(s) 113, 394, 489, 587, 734
BstSCI CCNGG 6 cut(s) 111, 392, 487, 561, 585, 732
BstSLI GKGCMC 1 cut(s) 128
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 4 cut(s) 41, 615, 884, 1325
BstV2I GAAGAC 1 cut(s) 1046
BstX2I RGATCY 3 cut(s) 808, 958, 1096
BstYI RGATCY 3 cut(s) 808, 958, 1096
Bsu36I CCTNAGG 1 cut(s) 1303
BsuRI GGCC 5 cut(s) 392, 527, 737, 768, 1019
BtsCI GGATG 2 cut(s) 250, 300
BtsIMutI CAGTG 5 cut(s) 205, 353, 466, 618, 690
Cac8I GCNNGC 2 cut(s) 351, 750
Cfr13I GGNCC 3 cut(s) 328, 479, 767
CseI GACGC 1 cut(s) 1307
Csp6I GTAC 6 cut(s) 83, 240, 250, 665, 1231, 1356
CviAII CATG 3 cut(s) 865, 937, 1215
CviQI GTAC 6 cut(s) 83, 240, 250, 665, 1231, 1356
DdeI CTNAG 9 cut(s) 404, 458, 739, 812, 962, 1119, 1196, 1303, 1333
DpnI GATC 5 cut(s) 204, 810, 960, 1098, 1227
DpnII GATC 5 cut(s) 202, 808, 958, 1096, 1225
DraIII CACNNNGTG 1 cut(s) 158
EaeI YGGCCR 2 cut(s) 390, 1017
Eam1104I CTCTTC 2 cut(s) 561, 937
EarI CTCTTC 2 cut(s) 561, 937
EciI GGCGGA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 737
Eco31I GGTCTC 1 cut(s) 1142
Eco47I GGWCC 2 cut(s) 328, 479
Eco57I CTGAAG 2 cut(s) 618, 653
Eco81I CCTNAGG 1 cut(s) 1303
EcoO109I RGGNCCY 3 cut(s) 328, 479, 767
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 5 cut(s) 111, 392, 487, 585, 732
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 3 cut(s) 868, 940, 1218
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 756, 788
FaqI GGGAC 1 cut(s) 1115
FatI CATG 3 cut(s) 864, 936, 1214
FauI CCCGC 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 30, 629, 898, 1314
FokI GGATG 2 cut(s) 257, 287
Fsp4HI GCNGC 4 cut(s) 30, 629, 898, 1314
FspBI CTAG 1 cut(s) 780
GluI GCNGC 4 cut(s) 30, 629, 898, 1314
GsuI CTGGAG 2 cut(s) 608, 716
HaeIII GGCC 5 cut(s) 392, 527, 737, 768, 1019
HapII CCGG 2 cut(s) 321, 563
HgaI GACGC 1 cut(s) 1307
Hin1I GRCGYC 1 cut(s) 1299
Hin1II CATG 3 cut(s) 868, 940, 1218
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 2 cut(s) 321, 563
HphI GGTGA 3 cut(s) 635, 845, 1373
Hpy166II GTNNAC 2 cut(s) 466, 583
Hpy188I TCNGA 9 cut(s) 222, 672, 948, 1032, 1122, 1166, 1182, 1274, 1329
Hpy188III TCNNGA 7 cut(s) 158, 477, 549, 761, 1058, 1145, 1305
Hpy8I GTNNAC 2 cut(s) 466, 583
HpyAV CCTTC 5 cut(s) 642, 758, 782, 974, 1162
HpyCH4III ACNGT 4 cut(s) 82, 357, 1082, 1270
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 870, 1298
HpyF3I CTNAG 9 cut(s) 404, 458, 739, 812, 962, 1119, 1196, 1303, 1333
Hsp92I GRCGYC 1 cut(s) 1299
Hsp92II CATG 3 cut(s) 868, 940, 1218
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 5 cut(s) 202, 808, 958, 1096, 1225
LmnI GCTCC 2 cut(s) 589, 894
Lsp1109I GCAGC 4 cut(s) 41, 615, 884, 1325
LweI GCATC 1 cut(s) 735
MaeI CTAG 1 cut(s) 780
MaeIII GTNAC 2 cut(s) 821, 1236
MalI GATC 5 cut(s) 204, 810, 960, 1098, 1227
MboI GATC 5 cut(s) 202, 808, 958, 1096, 1225
MboII GAAGA 7 cut(s) 31, 49, 548, 593, 708, 924, 1046
MfeI CAATTG 2 cut(s) 173, 1201
MflI RGATCY 3 cut(s) 808, 958, 1096
MhlI GDGCHC 1 cut(s) 128
MlsI TGGCCA 2 cut(s) 392, 1019
MluNI TGGCCA 2 cut(s) 392, 1019
MmeI TCCRAC 5 cut(s) 245, 423, 701, 1160, 1252
MnlI CCTC 7 cut(s) 650, 740, 1128, 1217, 1282, 1301, 1312
Mox20I TGGCCA 2 cut(s) 392, 1019
MroXI GAANNNNTTC 2 cut(s) 153, 1171
MscI TGGCCA 2 cut(s) 392, 1019
MseI TTAA 8 cut(s) 375, 384, 582, 659, 827, 876, 890, 1068
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 2 cut(s) 392, 1019
MspCI CTTAAG 2 cut(s) 374, 826
MspI CCGG 2 cut(s) 321, 563
MspR9I CCNGG 6 cut(s) 113, 394, 489, 563, 587, 734
MunI CAATTG 2 cut(s) 173, 1201
MvaI CCWGG 5 cut(s) 113, 394, 489, 587, 734
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 294, 870, 1298
NciI CCSGG 1 cut(s) 563
NdeII GATC 5 cut(s) 202, 808, 958, 1096, 1225
NlaIII CATG 3 cut(s) 868, 940, 1218
NlaIV GGNNCC 2 cut(s) 481, 769
NmuCI GTSAC 1 cut(s) 821
NspV TTCGAA 1 cut(s) 715
PceI AGGCCT 1 cut(s) 737
PdmI GAANNNNTTC 2 cut(s) 153, 1171
Pfl23II CGTACG 1 cut(s) 239
PkrI GCNGC 4 cut(s) 31, 630, 899, 1315
PpuMI RGGWCCY 2 cut(s) 328, 479
PshBI ATTAAT 1 cut(s) 876
Psp5II RGGWCCY 2 cut(s) 328, 479
Psp6I CCWGG 5 cut(s) 111, 392, 487, 585, 732
PspGI CCWGG 5 cut(s) 111, 392, 487, 585, 732
PspLI CGTACG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 481, 769
PspPI GGNCC 3 cut(s) 328, 479, 767
PspPPI RGGWCCY 2 cut(s) 328, 479
PsuI RGATCY 3 cut(s) 808, 958, 1096
RsaI GTAC 6 cut(s) 84, 241, 251, 666, 1232, 1357
RsaNI GTAC 6 cut(s) 83, 240, 250, 665, 1231, 1356
RseI CAYNNNNRTG 1 cut(s) 647
SaqAI TTAA 8 cut(s) 375, 384, 582, 659, 827, 876, 890, 1068
SatI GCNGC 4 cut(s) 30, 629, 898, 1314
Sau3AI GATC 5 cut(s) 202, 808, 958, 1096, 1225
Sau96I GGNCC 3 cut(s) 328, 479, 767
ScaI AGTACT 3 cut(s) 84, 666, 1357
ScrFI CCNGG 6 cut(s) 113, 394, 489, 563, 587, 734
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 715
SinI GGWCC 2 cut(s) 328, 479
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 2 cut(s) 374, 826
SmoI CTYRAG 2 cut(s) 374, 826
SseBI AGGCCT 1 cut(s) 737
SsiI CCGC 4 cut(s) 236, 347, 831, 1251
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 780
StuI AGGCCT 1 cut(s) 737
StyD4I CCNGG 6 cut(s) 111, 392, 487, 561, 585, 732
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 82, 357, 1082, 1270
TaqI TCGA 3 cut(s) 715, 1144, 1190
TatI WGTACW 4 cut(s) 82, 249, 664, 1355
Tru1I TTAA 8 cut(s) 375, 384, 582, 659, 827, 876, 890, 1068
Tru9I TTAA 8 cut(s) 375, 384, 582, 659, 827, 876, 890, 1068
TscAI CASTG 5 cut(s) 205, 360, 466, 625, 697
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 4 cut(s) 29, 628, 897, 1313
Tsp45I GTSAC 1 cut(s) 821
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 5 cut(s) 205, 360, 466, 625, 697
Vha464I CTTAAG 2 cut(s) 374, 826
VpaK11BI GGWCC 2 cut(s) 328, 479
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 4 cut(s) 193, 430, 994, 1135
XmnI GAANNNNTTC 2 cut(s) 153, 1171
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 3 cut(s) 84, 666, 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.