Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

36402031 .. 36403288

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1272400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCAAATTTGGTGTTTGTAATGGCAGTGGAAGCACTTCGAGAAATAGCTGCGCAACTGAATAAAAAGGACTGGAATTTCAGCGACCCATGCAGCAATATTCCAACTTTCTCAACCCCGCATACGGATCAGTACAACAATACTCTCTTCTGCAACTGCTCCATCTCTGTCGACGTCTGCCACGTCGAAAGCATTGGTCCAATACCGCACGAATGGACTTCTACGAAGTTGGAATTTCTGGTTCTCAGCGTGAACAACTTATCAGGACCAATCCCAGCTTATTTGGGAAACATGATTACTCTCCAAGCTTTGTATGCTTTGAATCTACATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.32

Weight (kDa)

5.04

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc16I	TGCGCA	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	2 cut(s)	119, 206
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	7, 76, 233
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	3 cut(s)	50, 278, 308
AluI	AGCT	3 cut(s)	50, 278, 308
AlwI	GGATC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	50, 93
ApoI	RAATTY	3 cut(s)	7, 76, 233
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	197, 266
AvaII	GGWCC	2 cut(s)	197, 266
BbvI	GCAGC	2 cut(s)	37, 105
BccI	CCATC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	51, 94
BlsI	GCNGC	2 cut(s)	52, 95
Bme18I	GGWCC	2 cut(s)	197, 266
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	197, 266
BsaHI	GRCGYC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	37, 105
BseYI	CCCAGC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	119, 206
BspCNI	CTCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 90, 314
BstV1I	GCAGC	2 cut(s)	37, 105
BtrI	CACGTC	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	197, 266
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	2 cut(s)	90, 292
CviJI	RGCY	3 cut(s)	50, 278, 308
CviKI_1	RGCY	3 cut(s)	50, 278, 308
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	197, 266
FaeI	CATG	2 cut(s)	93, 295
FaiI	YATR	5 cut(s)	91, 123, 293, 315, 330
FatI	CATG	2 cut(s)	89, 291
FauI	CCCGC	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	51, 94
Fsp4HI	GCNGC	2 cut(s)	51, 94
FspI	TGCGCA	1 cut(s)	54
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	2 cut(s)	51, 94
GsaI	CCCAGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	93, 295
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	172, 253
Hpy188III	TCNNGA	2 cut(s)	41, 264
Hpy8I	GTNNAC	2 cut(s)	172, 253
Hpy99I	CGWCG	2 cut(s)	176, 188
HpyCH4IV	ACGT	2 cut(s)	174, 183
HpyCH4V	TGCA	2 cut(s)	93, 153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 90, 314
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	2 cut(s)	174, 183
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	93, 295
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	4 cut(s)	58, 224, 249, 288
Lsp1109I	GCAGC	2 cut(s)	37, 105
MaeII	ACGT	2 cut(s)	174, 183
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	3 cut(s)	7, 76, 233
MmeI	TCCRAC	2 cut(s)	128, 210
MroXI	GAANNNNTTC	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	32, 90, 314
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	93, 295
NsbI	TGCGCA	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	52, 95
PspFI	CCCAGC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	197, 266
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	170
SatI	GCNGC	2 cut(s)	51, 94
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	197, 266
SetI	ASST	6 cut(s)	52, 177, 186, 280, 310, 335
SinI	GGWCC	2 cut(s)	197, 266
Sse9I	AATT	3 cut(s)	7, 76, 233
SsiI	CCGC	2 cut(s)	119, 206
SspI	AATATT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	177, 186
TaqI	TCGA	3 cut(s)	40, 171, 186
TasI	AATT	3 cut(s)	7, 76, 233
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	2 cut(s)	50, 93
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	2 cut(s)	197, 266
XapI	RAATTY	3 cut(s)	7, 76, 233
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.