Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

65289775 .. 65291315

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATGCTGATGATATTGGTTTTCTGCTTCATATGCATAAACTCAGTCAAAGTTAAAGCACAGCCTGCACCTCTTATTGCTTCAGAAGTGGAAGCTCTGGAAGAAATAGCTACACAAATAGGAAAGAAAGATTGGAACTTTAGCGTCGACCCTTGCAGCAATGACATGACCTGGGCCACTCCAATATCAGCTGCCAGGCCTCTGTTCAACAACATCGTCACCTGCAACTGCTCCTTCTCTGATGGTGCATGCCACGTCACCAACATGTATGTCACCCCTGAAAGCTTGTTCACTTGGTTTTCTCATGAACAACAACTCTTTGTGGAATTGTCCAACTGGGTTTTGGTTGTTTCCATGGATTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

122

Amino Acids

13.71

Weight (kDa)

4.45

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	170, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	4 cut(s)	95, 110, 191, 285
AluI	AGCT	4 cut(s)	95, 110, 191, 285
AoxI	GGCC	2 cut(s)	174, 197
ApeKI	GCWGC	2 cut(s)	156, 191
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	211, 250, 265
BbvI	GCAGC	2 cut(s)	168, 178
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	172, 196
BfuAI	ACCTGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	157, 192
BlsI	GCNGC	2 cut(s)	158, 193
Bme1390I	CCNGG	2 cut(s)	172, 196
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	172, 196
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	171, 354
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	172, 196
BseDI	CCNNGG	2 cut(s)	171, 354
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	168, 178
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	176, 199
BsnI	GGCC	2 cut(s)	176, 199
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	2 cut(s)	176, 199
BspCNI	CTCAG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	171, 354
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	172, 196
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	66, 250
BstDEI	CTNAG	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 65
BstNI	CCWGG	2 cut(s)	172, 196
BstNSI	RCATGY	2 cut(s)	252, 268
BstSCI	CCNGG	2 cut(s)	170, 194
BstV1I	GCAGC	2 cut(s)	168, 178
BstXI	CCANNNNNNTGG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	176, 199
BtgI	CCRYGG	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	66, 250
CciI	TCATGA	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	133
CviAII	CATG	5 cut(s)	166, 249, 265, 305, 355
CviJI	RGCY	7 cut(s)	64, 95, 110, 176, 191, 199, 285
CviKI_1	RGCY	7 cut(s)	64, 95, 110, 176, 191, 199, 285
DdeI	CTNAG	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	170, 194
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	5 cut(s)	169, 252, 268, 308, 358
FaiI	YATR	9 cut(s)	32, 34, 38, 167, 250, 266, 270, 306, 356
FatI	CATG	5 cut(s)	165, 248, 264, 304, 354
FauNDI	CATATG	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	157, 192
Fsp4HI	GCNGC	2 cut(s)	157, 192
GluI	GCNGC	2 cut(s)	157, 192
HaeIII	GGCC	2 cut(s)	176, 199
HgaI	GACGC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	169, 252, 268, 308, 358
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	283
HphI	GGTGA	3 cut(s)	211, 250, 265
Hpy166II	GTNNAC	2 cut(s)	148, 291
Hpy188I	TCNGA	2 cut(s)	85, 241
Hpy188III	TCNNGA	2 cut(s)	98, 305
Hpy8I	GTNNAC	2 cut(s)	148, 291
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	36, 68, 156, 225, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 65
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	169, 252, 268, 308, 358
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	9 cut(s)	78, 83, 157, 181, 184, 208, 235, 291, 322
Lsp1109I	GCAGC	2 cut(s)	168, 178
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	217, 256, 271
MboII	GAAGA	1 cut(s)	113
MluCI	AATT	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	2 cut(s)	81, 210
Mph1103I	ATGCAT	1 cut(s)	38
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	172, 196
MvaI	CCWGG	2 cut(s)	172, 196
MwoI	GCNNNNNNNGC	2 cut(s)	33, 65
NcoI	CCATGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	32
NlaIII	CATG	5 cut(s)	169, 252, 268, 308, 358
NmuCI	GTSAC	3 cut(s)	217, 256, 271
NsiI	ATGCAT	1 cut(s)	38
NspI	RCATGY	2 cut(s)	252, 268
PaeI	GCATGC	1 cut(s)	252
PagI	TCATGA	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	199
PciI	ACATGT	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	158, 193
PscI	ACATGT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	170, 194
PspGI	CCWGG	2 cut(s)	170, 194
PspPI	GGNCC	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	157, 192
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	172, 196
SetI	ASST	8 cut(s)	73, 97, 112, 173, 193, 224, 258, 287
SmiMI	CAYNNNNRTG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	2 cut(s)	170, 194
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	3 cut(s)	217, 256, 271
TseI	GCWGC	2 cut(s)	156, 191
Tsp45I	GTSAC	3 cut(s)	217, 256, 271
TspDTI	ATGAA	2 cut(s)	19, 321
XceI	RCATGY	2 cut(s)	252, 268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.