Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

52174124 .. 52186964

Gene Structure 12841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG406200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAAGAATTTATAGGAACAATCCAGTGGAGACGGTCATCTTCTTCATAGTGGTCATGTCCATGGCACAAGTTACATTTGAAGCACAGACCATGACTCTTCCAGCTGATGAGGTGCAAGCCCTTCATGAAGTTGCTGAGCAACTGAACAAAAAGGATTGGAATTTCAGCGACCCATGTAGAAATATTCCAACTTTCTCAATCCCACATACGGATCAGTACAACAACACCCTCTTCTGCAACTGTTCTTTCCCTGGGAATGTGTGCCATGTCCAAACCATCTTTCTTGTGGGTCAGGACCTGGATGGTGTGCTTCCACCATCACTGGTGAAGCTACCTTACCTTAAGGAACTCTACCTTCGAGCTAACAATCTCACTGGACAGTTGCCTGTGGCTCTCACTAATATGACCAAATTAAAAACACTTGGCCAATCCAAGAATCAATTCCTTCCTATATATCGCTGCAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

157

Amino Acids

17.91

Weight (kDa)

6.81

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	9, 163
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	253, 300
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 428, 460
AluBI	AGCT	3 cut(s)	107, 334, 365
AluI	AGCT	3 cut(s)	107, 334, 365
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	2 cut(s)	9, 163
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	3 cut(s)	287, 299, 328
BciT130I	CCWGG	2 cut(s)	255, 302
BcoDI	GTCTC	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	255, 302
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	255, 302
Bpu1102I	GCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	63, 253, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	26, 330, 382
BseBI	CCWGG	2 cut(s)	255, 302
BseDI	CCNNGG	3 cut(s)	63, 253, 254
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	3 cut(s)	26, 330, 382
BseXI	GCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	214
Bsp1720I	GCTNAGC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	63
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	127
BspPI	GGATC	1 cut(s)	222
BspTI	CTTAAG	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	26, 330, 382
BssECI	CCNNGG	3 cut(s)	63, 253, 254
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	255, 302
Bst4CI	ACNGT	3 cut(s)	37, 245, 384
Bst6I	CTCTTC	2 cut(s)	105, 239
BstAFI	CTTAAG	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	2 cut(s)	255, 302
BstSCI	CCNGG	2 cut(s)	253, 300
BstV1I	GCAGC	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	33, 323, 375
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	6 cut(s)	58, 64, 94, 128, 177, 269
CviJI	RGCY	6 cut(s)	107, 122, 334, 365, 395, 429
CviKI_1	RGCY	6 cut(s)	107, 122, 334, 365, 395, 429
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	105, 239
EarI	CTCTTC	2 cut(s)	105, 239
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	253, 300
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	6 cut(s)	61, 67, 97, 131, 180, 272
FatI	CATG	6 cut(s)	57, 63, 93, 127, 176, 268
Fnu4HI	GCNGC	1 cut(s)	463
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	463
GluI	GCNGC	1 cut(s)	463
HaeIII	GGCC	1 cut(s)	429
Hin1II	CATG	6 cut(s)	61, 67, 97, 131, 180, 272
HinfI	GANTC	2 cut(s)	97, 439
HphI	GGTGA	1 cut(s)	340
Hpy188III	TCNNGA	2 cut(s)	128, 296
HpyAV	CCTTC	3 cut(s)	134, 368, 458
HpyCH4III	ACNGT	3 cut(s)	37, 245, 384
HpyCH4V	TGCA	3 cut(s)	118, 240, 465
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	61, 67, 97, 131, 180, 272
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	4 cut(s)	34, 37, 92, 226
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	4 cut(s)	9, 163, 413, 443
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	106, 242
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	2 cut(s)	345, 416
MslI	CAYNNNNRTG	2 cut(s)	62, 404
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	255, 302
MvaI	CCWGG	2 cut(s)	255, 302
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	6 cut(s)	61, 67, 97, 131, 180, 272
PagI	TCATGA	1 cut(s)	127
PasI	CCCWGGG	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	253, 300
PspGI	CCWGG	2 cut(s)	253, 300
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	62, 404
SaqAI	TTAA	2 cut(s)	345, 416
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	255, 302
SetI	ASST	8 cut(s)	109, 117, 303, 336, 340, 345, 360, 367
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	62, 404
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	9, 163, 413, 443
SspI	AATATT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	253, 300
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	37, 245, 384
TaqI	TCGA	1 cut(s)	361
TasI	AATT	4 cut(s)	9, 163, 413, 443
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	2 cut(s)	345, 416
Tru9I	TTAA	2 cut(s)	345, 416
TscAI	CASTG	3 cut(s)	33, 330, 382
TseI	GCWGC	1 cut(s)	462
TspDTI	ATGAA	3 cut(s)	37, 116, 144
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	33, 330, 382
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	9, 163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.