Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008482.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

9864 .. 13216

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008482.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaagatggcaattagagttggagttggtgtttggaaaaccatcatgaacctcaacttggcgatgatactagttcactgcagttttggatcagtcaaagttcaagctctttcgactcgtcttcctgatactgaagtgcaagccctccgagaaattgctacacagatagggaaaaaagactgggacttcaaagtagacccgtgcctgaatgacacaacccacacaagctgggctactccaaagactgctgacaggcctctattcaataacactctcatttgcaactgctccttccctgatggctcatgccacgtcaccaacatcctcaaatgttcaaccaccagaacccgaagcatgatgccgctgctgcaaaaaactgacgccagccctcgtcgctgccaccgaccgccagaccttgccgcctcaacgcccctcataaaccttgctgccatcagcgaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.04

Weight (kDa)

9.12

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	3 cut(s)	362, 407, 420
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	104, 190, 265, 336
AhlI	ACTAGT	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	2 cut(s)	107, 228
AluI	AGCT	2 cut(s)	107, 228
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	4 cut(s)	364, 367, 396, 446
AsuHPI	GGTGA	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	351, 354, 383, 433
BccI	CCATC	3 cut(s)	50, 293, 458
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	6 cut(s)	362, 365, 368, 397, 420, 447
BlsI	GCNGC	6 cut(s)	363, 366, 369, 398, 421, 448
BmgBI	CACGTC	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	351, 354, 383, 433
BseYI	CCCAGC	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	362, 407, 420
BspANI	GGCC	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	89
BssNI	GRCGYC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	141, 385
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMCI	CGRYCG	1 cut(s)	407
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 393
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	351, 354, 383, 433
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	141, 385
CciI	TCATGA	1 cut(s)	45
CseI	GACGC	1 cut(s)	389
CviAII	CATG	3 cut(s)	46, 306, 355
CviJI	RGCY	7 cut(s)	107, 143, 228, 233, 256, 303, 387
CviKI_1	RGCY	7 cut(s)	107, 143, 228, 233, 256, 303, 387
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eco147I	AGGCCT	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	153
FaeI	CATG	3 cut(s)	49, 309, 358
FaiI	YATR	4 cut(s)	47, 307, 356, 437
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	45, 305, 354
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	362, 365, 368, 397, 420, 447
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	6 cut(s)	362, 365, 368, 397, 420, 447
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	6 cut(s)	362, 365, 368, 397, 420, 447
GsaI	CCCAGC	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	256
HgaI	GACGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	49, 309, 358
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	76, 196
Hpy188I	TCNGA	2 cut(s)	149, 464
Hpy188III	TCNNGA	2 cut(s)	46, 125
Hpy8I	GTNNAC	2 cut(s)	76, 196
Hpy99I	CGWCG	1 cut(s)	396
HpyAV	CCTTC	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	81, 139, 282, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 393
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	49, 309, 358
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	9 cut(s)	138, 166, 214, 218, 238, 309, 355, 397, 423
Lsp1109I	GCAGC	4 cut(s)	351, 354, 383, 433
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	16, 113
MluCI	AATT	2 cut(s)	12, 153
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	7 cut(s)	62, 155, 267, 335, 399, 433, 443
MspA1I	CMGCKG	1 cut(s)	364
MwoI	GCNNNNNNNGC	2 cut(s)	367, 393
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	49, 309, 358
NmuCI	GTSAC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PkrI	GCNGC	6 cut(s)	363, 366, 369, 398, 421, 448
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	83
SatI	GCNGC	6 cut(s)	362, 365, 368, 397, 420, 447
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	109
SetI	ASST	6 cut(s)	54, 109, 230, 315, 417, 444
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	79
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	2 cut(s)	12, 153
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	362, 407, 420
SspMI	CTAG	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	12, 153
TauI	GCSGC	2 cut(s)	364, 422
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	4 cut(s)	364, 367, 396, 446
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	17, 62
TspRI	CASTG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.