Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

8175016 .. 8176481

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCACAGCAAGTGTATGAGCAAATGTCTAGTTGGTATTCTTAAAGGCCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCCTACCTTACACAAATCGTTTTCCCAAGGAACTTCCTCAGTGGTAATATACCGAGTGAATGGGCTTCTACAAAGTTGGAATTTATGAGTCTAGAGTCAAACATGTTTTCCGGAACTGTTCCTCCTGAGTTTGGCAAGTTGGTTAACTTGCAGAGACTCATTATTAATGCAAACAATCTCACAGGAGTGTTGCCACTGCATCTCACTAATCTGACCAAATTAACAGAGTTGAGGATTAGCAGTAACAACTTCACTGGAATTATTCCAGACTTTTTCCGAAGTTGGAGTCAACTTGAGAAATTAGAGATCCAAGCTAGTGGTCTAGAAGGCCCCATACCGTCTAGCATTTCTGTCTTGAGTAATCTAACAGAACTAAGGATCAGTGACTTAAACGGAGGGGGTTCAGTATTTCCAAACTTGACTAATATGAAAAGCATGAAAAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

179

Amino Acids

19.64

Weight (kDa)

9.26

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	55 - 157	8.3e-09	Leucine-rich repeat region
LRR_8	PF13855	103 - 159	2.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	200
AclWI	GGATC	2 cut(s)	391, 476
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	196, 228
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	391, 476
Aor13HI	TCCGGA	1 cut(s)	200
AoxI	GGCC	2 cut(s)	46, 418
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AseI	ATTAAT	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	419
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BccI	CCATC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	5 cut(s)	29, 182, 405, 413, 432
BglII	AGATCT	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	1 cut(s)	298
BpuEI	CTTGAG	2 cut(s)	404, 466
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	142, 207
BseNI	ACTGG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	48, 420
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	48, 420
Bsp13I	TCCGGA	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	52, 396, 468
BspANI	GGCC	2 cut(s)	48, 420
BspCNI	CTCAG	2 cut(s)	141, 208
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	2 cut(s)	391, 476
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	52, 396, 468
BssT1I	CCWWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	208, 429
BstDEI	CTNAG	3 cut(s)	128, 216, 464
BstKTI	GATC	3 cut(s)	55, 399, 471
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	52, 396, 468
BstNSI	RCATGY	1 cut(s)	196
BstX2I	RGATCY	2 cut(s)	52, 396
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	2 cut(s)	52, 396
BsuRI	GGCC	2 cut(s)	48, 420
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	4 cut(s)	136, 284, 342, 478
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	2 cut(s)	193, 526
CviJI	RGCY	4 cut(s)	48, 155, 404, 420
CviKI_1	RGCY	4 cut(s)	48, 155, 404, 420
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	3 cut(s)	128, 216, 464
DpnI	GATC	3 cut(s)	54, 398, 470
DpnII	GATC	3 cut(s)	52, 396, 468
Eco130I	CCWWGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	2 cut(s)	196, 529
FaiI	YATR	7 cut(s)	17, 140, 176, 194, 425, 518, 527
FatI	CATG	2 cut(s)	192, 525
FspBI	CTAG	5 cut(s)	29, 182, 405, 413, 432
HaeIII	GGCC	2 cut(s)	48, 420
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	2 cut(s)	196, 529
HincII	GTYRAC	2 cut(s)	235, 380
HindII	GTYRAC	2 cut(s)	235, 380
HinfI	GANTC	4 cut(s)	178, 185, 246, 376
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	3 cut(s)	65, 235, 380
Hpy188I	TCNGA	2 cut(s)	303, 368
Hpy188III	TCNNGA	6 cut(s)	182, 201, 215, 356, 413, 445
Hpy8I	GTNNAC	3 cut(s)	65, 235, 380
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	208, 429
HpyCH4V	TGCA	5 cut(s)	4, 83, 241, 260, 289
HpyF3I	CTNAG	3 cut(s)	128, 216, 464
Hsp92II	CATG	2 cut(s)	196, 529
Kpn2I	TCCGGA	1 cut(s)	200
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	52, 396, 468
LpnPI	CCDG	6 cut(s)	45, 214, 228, 258, 330, 369
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	5 cut(s)	29, 182, 405, 413, 432
MaeIII	GTNAC	3 cut(s)	87, 332, 473
MalI	GATC	3 cut(s)	54, 398, 470
MboI	GATC	3 cut(s)	52, 396, 468
MflI	RGATCY	2 cut(s)	52, 396
MluCI	AATT	4 cut(s)	170, 308, 348, 389
MlyI	GAGTC	4 cut(s)	187, 194, 240, 385
MmeI	TCCRAC	2 cut(s)	147, 353
MnlI	CCTC	4 cut(s)	137, 222, 315, 479
MroI	TCCGGA	1 cut(s)	200
MseI	TTAA	5 cut(s)	42, 234, 255, 311, 479
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	52, 396, 468
NlaIII	CATG	2 cut(s)	196, 529
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	275
PciI	ACATGT	1 cut(s)	192
PleI	GAGTC	4 cut(s)	186, 193, 240, 384
PpsI	GAGTC	4 cut(s)	186, 193, 240, 384
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	52, 396
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	42, 234, 255, 311, 479
Sau3AI	GATC	3 cut(s)	52, 396, 468
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	4 cut(s)	187, 194, 240, 385
SetI	ASST	2 cut(s)	99, 406
SfaNI	GCATC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	383, 445
SmoI	CTYRAG	2 cut(s)	383, 445
Sse9I	AATT	4 cut(s)	170, 308, 348, 389
SspMI	CTAG	5 cut(s)	29, 182, 405, 413, 432
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	208, 429
TasI	AATT	4 cut(s)	170, 308, 348, 389
TatI	WGTACW	1 cut(s)	64
Tru1I	TTAA	5 cut(s)	42, 234, 255, 311, 479
Tru9I	TTAA	5 cut(s)	42, 234, 255, 311, 479
TscAI	CASTG	4 cut(s)	136, 291, 349, 478
TseFI	GTSAC	1 cut(s)	473
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	1 cut(s)	533
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	4 cut(s)	136, 291, 349, 478
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	170
XbaI	TCTAGA	2 cut(s)	181, 412
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XspI	CTAG	5 cut(s)	29, 182, 405, 413, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.