Rh5BG089500

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
7778197 .. 7784194
5998 bp
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UTR
Exon/CDS
Intron
Rh5BG089500.1

Sequence Viewer

Length: 519 bp
ATGAGAGAAATTGCTTCACAATTGGGAAAAAAAGACTGGAACTTCGACGTAGACCCATGCCTCAACGACACCAGCTGGGCTACCCCAATATCTGATCGTTACTCGCTATACACCAACATTGTCTCTTGCAACTGTTCCTACGTCCCTGATGGTGTATGCCACGTCACCAGTATTGTTCTTACAGGGCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCCTGCCTTACACAAGTTCTACTCGGTCAAAACAATCTCTCAGGACAGTTGCCATTGGATCTCTCTAATCTAAATAAATTAAAAGTACTGTGTCTGACACATAATGCCCTCACTGGGTCTATTCCAGAGTTATCTGCACCTCTTCCAGATTGGGTCAAGAGAAATCGCAATAACAAGTCCACTCATTCTGGTCTCCGAAAAGAGTCCACTCCTCGTGATAGCAAAAAGAAGGCATTCTTTGGTGGAATGGATGTCTGGATAGCAAGACATCCAGGGAAAAAGGAAAAGTAG

Protein Analysis

172

Amino Acids

18.94

Weight (kDa)

9.07

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AclWI GGATC 1 cut(s) 294
AfaI GTAC 2 cut(s) 204, 315
AfiI CCNNNNNNNGG 1 cut(s) 342
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 2 cut(s) 127, 425
AlwI GGATC 1 cut(s) 294
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 157
BauI CACGAG 1 cut(s) 441
BccI CCATC 2 cut(s) 143, 220
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 127, 425
BglII AGATCT 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 501
BmgBI CACGTC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 501
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 500
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 3 cut(s) 41, 168, 346
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 2 cut(s) 484, 496
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 3 cut(s) 41, 168, 346
BseRI GAGGAG 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 127, 425
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 461
Bso31I GGTCTC 1 cut(s) 425
Bsp143I GATC 3 cut(s) 94, 190, 286
BspCNI CTCAG 1 cut(s) 281
BspPI GGATC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 425
BsrI ACTGG 3 cut(s) 41, 168, 346
BssECI CCNNGG 1 cut(s) 500
BssMI GATC 3 cut(s) 94, 190, 286
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 3 cut(s) 134, 276, 318
Bst6I CTCTTC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 2 cut(s) 484, 496
BstKTI GATC 3 cut(s) 97, 193, 289
BstMAI GTCTC 2 cut(s) 127, 425
BstMBI GATC 3 cut(s) 94, 190, 286
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstX2I RGATCY 2 cut(s) 190, 286
BstYI RGATCY 2 cut(s) 190, 286
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 484, 496
BtsIMutI CAGTG 1 cut(s) 339
Csp6I GTAC 2 cut(s) 203, 314
CviAII CATG 1 cut(s) 57
CviJI RGCY 2 cut(s) 75, 80
CviKI_1 RGCY 2 cut(s) 75, 80
CviQI GTAC 2 cut(s) 203, 314
DdeI CTNAG 1 cut(s) 268
DpnI GATC 3 cut(s) 96, 192, 288
DpnII GATC 3 cut(s) 94, 190, 286
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 499
FaeI CATG 1 cut(s) 60
FaiI YATR 4 cut(s) 58, 109, 157, 330
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 51
FokI GGATG 2 cut(s) 483, 491
GsaI CCCAGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 60
HinfI GANTC 1 cut(s) 431
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 4 cut(s) 52, 203, 408, 435
Hpy188I TCNGA 3 cut(s) 94, 324, 425
Hpy188III TCNNGA 6 cut(s) 270, 353, 374, 385, 443, 484
Hpy8I GTNNAC 4 cut(s) 52, 203, 408, 435
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 3 cut(s) 134, 276, 318
HpyCH4IV ACGT 3 cut(s) 48, 141, 162
HpyCH4V TGCA 3 cut(s) 129, 221, 365
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 3 cut(s) 48, 141, 162
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 3 cut(s) 94, 190, 286
MaeII ACGT 3 cut(s) 48, 141, 162
MaeIII GTNAC 3 cut(s) 98, 163, 225
MalI GATC 3 cut(s) 96, 192, 288
MboI GATC 3 cut(s) 94, 190, 286
MboII GAAGA 1 cut(s) 362
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 190, 286
MluCI AATT 3 cut(s) 9, 20, 305
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 4 cut(s) 71, 347, 378, 450
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 501
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 501
NdeII GATC 3 cut(s) 94, 190, 286
NlaIII CATG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 163
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 461
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 499
PsuI RGATCY 2 cut(s) 190, 286
PvuII CAGCTG 1 cut(s) 75
RsaI GTAC 2 cut(s) 204, 315
RsaNI GTAC 2 cut(s) 203, 314
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 3 cut(s) 94, 190, 286
ScaI AGTACT 1 cut(s) 315
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 501
SetI ASST 5 cut(s) 51, 77, 144, 165, 370
Sse9I AATT 3 cut(s) 9, 20, 305
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 3 cut(s) 134, 276, 318
TaiI ACGT 3 cut(s) 51, 144, 165
TaqI TCGA 1 cut(s) 45
TaqII GACCGA 1 cut(s) 242
TasI AATT 3 cut(s) 9, 20, 305
TatI WGTACW 2 cut(s) 202, 313
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspRI CASTG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.