Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

25645994 .. 25646754

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG254500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCACAAGTTCCCAAAATTCAAAAACTTAACTTCTTTGTGCTCATGTGCATTGGAGTGATTGGACCAATCAAATCCCAAGCTCAGTGGGGGACTCTTGCATCTGATGAAGTGCAAGCCCTTGGTGAAATTGCTACACAACTGAATAAAAAGAACTGGAATTTGAGTGACCCATGTAGCAATATTCCAACTTTCTCAATCCCACATACGGATCAGTACAATAACACCCTCTTCTGCAACTGTCATTTCCCTGGCAATGCGTGCCATGTCGAAACCATGTATGTGTGCCCCCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

6.23

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	18, 160
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	219
ApoI	RAATTY	2 cut(s)	18, 160
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	121, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	121, 250
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	45, 290
Bsp143I	GATC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	121, 250
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	117, 262
BstDEI	CTNAG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	117, 262
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	4 cut(s)	46, 174, 266, 277
CviJI	RGCY	2 cut(s)	83, 119
CviKI_1	RGCY	2 cut(s)	83, 119
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	49, 177, 269, 280
FaiI	YATR	6 cut(s)	47, 175, 207, 267, 278, 282
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	4 cut(s)	45, 173, 265, 276
Hin1II	CATG	4 cut(s)	49, 177, 269, 280
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	51, 101, 115, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	49, 177, 269, 280
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	142, 237, 264
LweI	GCATC	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	45, 290
MluCI	AATT	4 cut(s)	18, 129, 160, 293
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	56, 281
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	4 cut(s)	49, 177, 269, 280
NmuCI	GTSAC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	56, 281
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	45, 290
SetI	ASST	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	110
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	56, 281
Sse9I	AATT	4 cut(s)	18, 129, 160, 293
SspI	AATATT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	18, 129, 160, 293
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	2 cut(s)	18, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.