Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

8294874 .. 8299408

Gene Structure 4535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCATGATAAGAAGAAGATGAAGCATGACATCATTATGCTCATGATCTTGGTTCTCTGCTTGATCTGCATAACATCACTCGAAGTTGAAGCAAAATGTTCGCCTCTTCCGCCTACTGAAGTGGAAGCACTAAAAGAAATTGGTAAGGAATTGGGGAAAAGGGACTGGAACTTTGAAGAAGACCCATGTAGCAATAAGTCAAGTTGGGCCAGCCCATTCGACACAAAGTCTGAGGATTGGCCTTCATCCATGAACAATGTCACTTGCAGCTGCTCCTTCCCTGATGAAACATACCACGTTATCAGCATAATTCTTCAAGGACAAGATTTACCTGGTGTACTTCCACCATCTATTGCGAGGGATCTCAGCTTCAACAGATTGGTTGGAAGAATTCCTGAATTTAAAAGCGTACAGTACTTGTATTTGACAAACAACTTGCTCACTGGGCCTATTCCAGACTGGATCAATAGCAGAGATTGGCGCTACTTTATAGATATTTCTTACAATAATTTTTCTGAGATCTCTGCACAGCTACAGTCTTGTACAGGAACCCTGAACTCCTTTAAAAGTTTTACTGCACGAGACAACTTATTATCAGAAGAGTGTCTGAAGAAATATCCTTGTGGCAAAGACTTCAGGCCTCCTCTTGGTAGAGAAACAAAGGCACTTATTGTGGTTGGAGCTTCAGTTTTGTGCCTTGCTTTATTGATTTTAGGCATTCTTTGGTGGCAAGGCTGTCTGAACAGCAAGACATTAAGGGAAAGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

257

Amino Acids

29.15

Weight (kDa)

5.99

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	369, 470
AcsI	RAATTY	2 cut(s)	390, 398
AcuI	CTGAAG	4 cut(s)	138, 619, 629, 669
AfaI	GTAC	4 cut(s)	339, 411, 416, 544
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	89, 176, 317, 373
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	270, 369, 532, 683
AluI	AGCT	4 cut(s)	270, 369, 532, 683
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	2 cut(s)	369, 470
AoxI	GGCC	4 cut(s)	207, 239, 446, 638
ApeKI	GCWGC	2 cut(s)	267, 270
ApoI	RAATTY	2 cut(s)	390, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	207, 446
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	257, 279
BccI	CCATC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	1 cut(s)	772
BfmI	CTRYAG	1 cut(s)	533
BfoI	RGCGCY	1 cut(s)	484
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	2 cut(s)	268, 271
BlsI	GCNGC	2 cut(s)	269, 272
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	333
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	207, 446
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	3 cut(s)	170, 448, 464
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMII	CTCAG	3 cut(s)	222, 379, 507
BseNI	ACTGG	3 cut(s)	170, 448, 464
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	2 cut(s)	257, 279
BsgI	GTGCAG	2 cut(s)	510, 561
BshFI	GGCC	4 cut(s)	209, 241, 448, 640
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	4 cut(s)	209, 241, 448, 640
Bsp1407I	TGTACA	1 cut(s)	542
Bsp143I	GATC	5 cut(s)	45, 63, 361, 462, 519
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	4 cut(s)	209, 241, 448, 640
BspCNI	CTCAG	3 cut(s)	223, 378, 508
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	550
BspPI	GGATC	2 cut(s)	369, 470
BsrGI	TGTACA	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	170, 448, 464
BssMI	GATC	5 cut(s)	45, 63, 361, 462, 519
BssSI	CACGAG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	414, 537
Bst6I	CTCTTC	2 cut(s)	111, 594
BstAUI	TGTACA	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	231, 365, 516
BstF5I	GGATG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	5 cut(s)	48, 66, 364, 465, 522
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	5 cut(s)	45, 63, 361, 462, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 109, 445
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	257, 279
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	361, 519
BstYI	RGATCY	2 cut(s)	361, 519
BsuRI	GGCC	4 cut(s)	209, 241, 448, 640
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	211
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	207, 446
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	4 cut(s)	338, 410, 415, 543
CviAII	CATG	5 cut(s)	5, 26, 43, 186, 250
CviQI	GTAC	4 cut(s)	338, 410, 415, 543
DdeI	CTNAG	3 cut(s)	231, 365, 516
DpnI	GATC	5 cut(s)	47, 65, 363, 464, 521
DpnII	GATC	5 cut(s)	45, 63, 361, 462, 519
DraI	TTTAAA	2 cut(s)	403, 565
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	111, 594
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	2 cut(s)	111, 594
EciI	GGCGGA	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	640
Eco57I	CTGAAG	4 cut(s)	138, 619, 629, 669
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 29, 46, 189, 253
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	4, 25, 42, 185, 249
Fnu4HI	GCNGC	2 cut(s)	268, 271
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	268, 271
FspBI	CTAG	1 cut(s)	772
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	268, 271
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	4 cut(s)	209, 241, 448, 640
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	5 cut(s)	8, 29, 46, 189, 253
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	5 cut(s)	232, 517, 598, 609, 741
Hpy188III	TCNNGA	3 cut(s)	43, 395, 455
Hpy8I	GTNNAC	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	252, 286
HpyCH4III	ACNGT	2 cut(s)	414, 537
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	4, 69, 267, 527, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 109, 445
HpyF3I	CTNAG	3 cut(s)	231, 365, 516
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	8, 29, 46, 189, 253
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	45, 63, 361, 462, 519
LmnI	GCTCC	2 cut(s)	278, 680
Lsp1109I	GCAGC	2 cut(s)	257, 279
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	1 cut(s)	772
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	259, 767
MalI	GATC	5 cut(s)	47, 65, 363, 464, 521
MboI	GATC	5 cut(s)	45, 63, 361, 462, 519
MboII	GAAGA	9 cut(s)	25, 28, 98, 188, 191, 305, 399, 611, 622
MflI	RGATCY	2 cut(s)	361, 519
MluCI	AATT	6 cut(s)	138, 149, 309, 390, 398, 508
MmeI	TCCRAC	2 cut(s)	364, 658
MnlI	CCTC	6 cut(s)	114, 226, 351, 651, 654, 758
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	402, 564, 755
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	66, 109, 445
NdeII	GATC	5 cut(s)	45, 63, 361, 462, 519
NlaIII	CATG	5 cut(s)	8, 29, 46, 189, 253
NlaIV	GGNNCC	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	640
PctI	GAATGC	1 cut(s)	717
PkrI	GCNGC	2 cut(s)	269, 272
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	207, 446
PsuI	RGATCY	2 cut(s)	361, 519
PvuII	CAGCTG	1 cut(s)	270
RsaI	GTAC	4 cut(s)	339, 411, 416, 544
RsaNI	GTAC	4 cut(s)	338, 410, 415, 543
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	402, 564, 755
SatI	GCNGC	2 cut(s)	268, 271
Sau3AI	GATC	5 cut(s)	45, 63, 361, 462, 519
Sau96I	GGNCC	2 cut(s)	207, 446
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	7 cut(s)	272, 300, 334, 371, 534, 685, 769
SexAI	ACCWGGT	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	138, 149, 309, 390, 398, 508
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	772
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	414, 537
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	81, 219
TasI	AATT	6 cut(s)	138, 149, 309, 390, 398, 508
TatI	WGTACW	3 cut(s)	337, 414, 542
Tru1I	TTAA	3 cut(s)	402, 564, 755
Tru9I	TTAA	3 cut(s)	402, 564, 755
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	267, 270
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	35, 234, 266, 300
TspRI	CASTG	1 cut(s)	448
XapI	RAATTY	2 cut(s)	390, 398
XspI	CTAG	1 cut(s)	772
ZrmI	AGTACT	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.