Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7936134 .. 7944269

Gene Structure 8136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG090200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAGAAGTTCTCAACTGTCAAAAACCCATCTTCTTTTGCTATGTTGCTTTGCTTGTTGTGCTTATTTGCATTGTACCCATCAAATCTCAAGCACAATCTGGGACTCTTGCACCTGATGAAGTGGAAGCCCTTCGTGAAATAGCTGAACAACTGAATAAGAAGGACTGGAATTTCAGTGACCCATGTAGCAATGTTCCTACGTTTTCGAGCCCACATACTGATCAGTATAACAATACTTTAGTCTGCAATTGCTCCATCTCCAGCAATGTATGCCACATTGAAAGCATTTATCTTACTGGTCAGGATCTAGATGGTGTTCTTCCAGCATCACTGGCTAAGCTACCTTATCTTAAGCAACAATTGGTTCAGAAGTATTTCCCAACAGAACAGCTCGACAAATTGGTACTGAAGGATTTTGACATTAGAAAGGAAGCACTAGGGGTTGATAAGGAAGTGATCAAGGTATTTAAAGCAGTTGTTAATGTTAAGACTCTACTAATCCGCTTTCAGTGGGCTGGGAGAGGGACAACTAATATTCCTCAAAGAGGAAAATATGGTTCTCTTATATCAGCCATCTCAGTGCAGTCTGTCAACAAGGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.51

Weight (kDa)

7.52

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	133 - 193	2.2e-08	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	2 cut(s)	78, 408
AfiI	CCNNNNNNNGG	1 cut(s)	548
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	3 cut(s)	146, 343, 394
AluI	AGCT	3 cut(s)	146, 343, 394
AlwI	GGATC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	172
Asp700I	GAANNNNTTC	2 cut(s)	132, 377
BanII	GRGCYC	1 cut(s)	215
BccI	CCATC	5 cut(s)	38, 89, 266, 308, 584
BclI	TGATCA	2 cut(s)	223, 459
BfaI	CTAG	2 cut(s)	311, 440
BfrI	CTTAAG	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	339
BmsI	GCATC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	173, 304, 339
Bse3DI	GCAATG	2 cut(s)	199, 274
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	2 cut(s)	199, 274
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	3 cut(s)	173, 304, 339
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	605
BslFI	GGGAC	2 cut(s)	118, 541
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	118, 541
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	223, 307, 459
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	505
BspCNI	CTCAG	1 cut(s)	593
BspPI	GGATC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	199, 274
BsrI	ACTGG	3 cut(s)	173, 304, 339
BssMI	GATC	3 cut(s)	223, 307, 459
Bst4CI	ACNGT	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	339, 580
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstKTI	GATC	3 cut(s)	226, 310, 462
BstMBI	GATC	3 cut(s)	223, 307, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 273, 335
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsIMutI	CAGTG	4 cut(s)	184, 332, 518, 588
Csp6I	GTAC	2 cut(s)	77, 407
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	8 cut(s)	131, 146, 213, 338, 343, 394, 518, 575
CviKI_1	RGCY	8 cut(s)	131, 146, 213, 338, 343, 394, 518, 575
CviQI	GTAC	2 cut(s)	77, 407
DdeI	CTNAG	2 cut(s)	339, 580
DpnI	GATC	3 cut(s)	225, 309, 461
DpnII	GATC	3 cut(s)	223, 307, 459
DraI	TTTAAA	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	1 cut(s)	189
FaiI	YATR	8 cut(s)	45, 187, 219, 231, 274, 558, 569, 607
FaqI	GGGAC	2 cut(s)	118, 541
FatI	CATG	1 cut(s)	185
FbaI	TGATCA	2 cut(s)	223, 459
FriOI	GRGCYC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	311, 440
GsaI	CCCAGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	247
Hin1II	CATG	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	3 cut(s)	106, 493, 602
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	137, 305, 311
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	143, 157, 406
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	72, 113, 249, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 273, 335
HpyF3I	CTNAG	2 cut(s)	339, 580
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	189
Ksp22I	TGATCA	2 cut(s)	223, 459
Kzo9I	GATC	3 cut(s)	223, 307, 459
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	9 cut(s)	87, 129, 154, 277, 285, 290, 320, 339, 504
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	2 cut(s)	311, 440
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	225, 309, 461
MboI	GATC	3 cut(s)	223, 307, 459
MboII	GAAGA	2 cut(s)	25, 314
MfeI	CAATTG	2 cut(s)	250, 362
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	4 cut(s)	172, 250, 362, 401
MlyI	GAGTC	2 cut(s)	100, 487
MnlI	CCTC	3 cut(s)	518, 542, 552
MroXI	GAANNNNTTC	2 cut(s)	132, 377
MseI	TTAA	4 cut(s)	354, 471, 483, 489
MslI	CAYNNNNRTG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	353
MunI	CAATTG	2 cut(s)	250, 362
MwoI	GCNNNNNNNGC	3 cut(s)	61, 273, 335
NdeII	GATC	3 cut(s)	223, 307, 459
NlaIII	CATG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	179
PdmI	GAANNNNTTC	2 cut(s)	132, 377
PleI	GAGTC	2 cut(s)	100, 487
PpsI	GAGTC	2 cut(s)	100, 487
PspFI	CCCAGC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	78, 408
RsaNI	GTAC	2 cut(s)	77, 407
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	354, 471, 483, 489
Sau3AI	GATC	3 cut(s)	223, 307, 459
SchI	GAGTC	2 cut(s)	100, 487
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	7 cut(s)	118, 148, 206, 345, 349, 396, 468
SfaNI	GCATC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	90, 353
SmoI	CTYRAG	2 cut(s)	90, 353
Sse9I	AATT	4 cut(s)	172, 250, 362, 401
SsiI	CCGC	1 cut(s)	505
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	311, 440
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	209, 396
TasI	AATT	4 cut(s)	172, 250, 362, 401
Tru1I	TTAA	4 cut(s)	354, 471, 483, 489
Tru9I	TTAA	4 cut(s)	354, 471, 483, 489
TscAI	CASTG	4 cut(s)	184, 339, 518, 588
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	4 cut(s)	184, 339, 518, 588
Vha464I	CTTAAG	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	310
XmnI	GAANNNNTTC	2 cut(s)	132, 377
XspI	CTAG	2 cut(s)	311, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.