Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7806879 .. 7813838

Gene Structure 6960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG089700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGATGGCAATTAGACTTGGAGTTAGAGTTTGGAAAACCATCATGGTCCTCAACTTGGTGGTGATACTAGTTCACTGCAGTTTTGGATTAGTCGAAATTGAAGCTCTTTCGACTCGTCTCCCTGATACTGAAGTGCAAGCCCTCCGAGAAATTGCTACACAAATAGGAAAAGACTGGAACTTCAGGGTAGACCCGTGCAGAGGCTGGACTACCCCAAATTCTACTGACAATGAATTCAAAAACATTCTCAAGTGCAACTGCTCCTTCCCTGATGGCCCATGCCACGTCACCAACATTATTCTTAAAGGCCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCATACCTTACAGAAATGGGGATTAGCAGTAACAACTTCACTGGAAGAATTCCAGACTTTTTCCGAAGTTGGAGTCAACTTATAAAATTAATGCTGAGGAGCTGCGGTTTATCAGGACCTATTCCTGATTTAAAAGCAATGGCAGGATTGAAAGAATTGTGTCTAGCAGACAATTCTATCATTCAGTACTCATTGCATATAAATTGCGGTGGAGGAGCGACCACCATTGGAGAAGTCAATTATGAAGATGATACAGATCTTGGAGTCGGTGAAAACAACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.31

Weight (kDa)

5.62

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	459, 561
AcsI	RAATTY	3 cut(s)	220, 236, 402
AcuI	CTGAAG	2 cut(s)	153, 169
AfaI	GTAC	2 cut(s)	330, 542
AfiI	CCNNNNNNNGG	2 cut(s)	58, 203
AgsI	TTSAA	3 cut(s)	104, 241, 505
AhlI	ACTAGT	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	2 cut(s)	107, 456
AluI	AGCT	2 cut(s)	107, 456
Alw26I	GTCTC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	207
AoxI	GGCC	2 cut(s)	277, 310
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	3 cut(s)	220, 236, 402
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AseI	ATTAAT	1 cut(s)	443
AspS9I	GGNCC	3 cut(s)	49, 278, 470
AsuHPI	GGTGA	3 cut(s)	76, 283, 635
AvaII	GGWCC	2 cut(s)	49, 470
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	50, 269, 346
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	2 cut(s)	71, 518
BfmI	CTRYAG	1 cut(s)	79
BglII	AGATCT	2 cut(s)	316, 610
BisI	GCNGC	1 cut(s)	457
BlsI	GCNGC	1 cut(s)	458
BmcAI	AGTACT	1 cut(s)	542
Bme18I	GGWCC	2 cut(s)	49, 470
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	49, 278, 470
Bpu10I	CCTNAGC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	609
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 203
Bse1I	ACTGG	2 cut(s)	182, 400
Bse3DI	GCAATG	2 cut(s)	498, 545
Bse8I	GATNNNNATC	1 cut(s)	609
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	58, 203
BseMI	GCAATG	2 cut(s)	498, 545
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	2 cut(s)	182, 400
BseRI	GAGGAG	2 cut(s)	466, 582
BseXI	GCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	279, 312
BslI	CCNNNNNNNGG	2 cut(s)	58, 203
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	279, 312
Bsp143I	GATC	2 cut(s)	316, 610
BspACI	CCGC	2 cut(s)	459, 561
BspANI	GGCC	2 cut(s)	279, 312
BspCNI	CTCAG	1 cut(s)	441
BspMAI	CTGCAG	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	498, 545
BsrI	ACTGG	2 cut(s)	182, 400
BssMI	GATC	2 cut(s)	316, 610
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	319, 613
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	316, 610
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	316, 610
BstYI	RGATCY	2 cut(s)	316, 610
BsuRI	GGCC	2 cut(s)	279, 312
BtrI	CACGTC	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 393
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	49, 278, 470
Csp6I	GTAC	2 cut(s)	329, 541
CviAII	CATG	2 cut(s)	46, 282
CviJI	RGCY	6 cut(s)	107, 143, 207, 279, 312, 456
CviKI_1	RGCY	6 cut(s)	107, 143, 207, 279, 312, 456
CviQI	GTAC	2 cut(s)	329, 541
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	2 cut(s)	318, 612
DpnII	GATC	2 cut(s)	316, 610
DraI	TTTAAA	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	49, 470
Eco57I	CTGAAG	2 cut(s)	153, 169
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRI	GAATTC	2 cut(s)	236, 402
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	49, 285
FaiI	YATR	7 cut(s)	47, 283, 358, 437, 552, 554, 597
FatI	CATG	2 cut(s)	45, 281
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	2 cut(s)	71, 518
GluI	GCNGC	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	279, 312
Hin1II	CATG	2 cut(s)	49, 285
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HinfI	GANTC	3 cut(s)	115, 427, 618
HphI	GGTGA	3 cut(s)	76, 283, 635
Hpy166II	GTNNAC	4 cut(s)	76, 193, 329, 431
Hpy188I	TCNGA	2 cut(s)	149, 419
Hpy188III	TCNNGA	3 cut(s)	407, 468, 479
Hpy8I	GTNNAC	4 cut(s)	76, 193, 329, 431
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	6 cut(s)	81, 139, 201, 258, 347, 550
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	49, 285
Kzo9I	GATC	2 cut(s)	316, 610
LmnI	GCTCC	3 cut(s)	269, 453, 569
Lsp1109I	GCAGC	1 cut(s)	443
MaeI	CTAG	2 cut(s)	71, 518
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	289, 351, 383
MalI	GATC	2 cut(s)	318, 612
MboI	GATC	2 cut(s)	316, 610
MboII	GAAGA	3 cut(s)	16, 411, 611
MflI	RGATCY	2 cut(s)	316, 610
MlyI	GAGTC	3 cut(s)	109, 436, 627
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	5 cut(s)	62, 155, 197, 444, 560
MseI	TTAA	4 cut(s)	306, 443, 485, 637
NdeII	GATC	2 cut(s)	316, 610
NlaIII	CATG	2 cut(s)	49, 285
NmuCI	GTSAC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	3 cut(s)	109, 435, 626
PpsI	GAGTC	3 cut(s)	109, 435, 626
PpuMI	RGGWCCY	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	470
PspPI	GGNCC	3 cut(s)	49, 278, 470
PspPPI	RGGWCCY	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	316, 610
RsaI	GTAC	2 cut(s)	330, 542
RsaNI	GTAC	2 cut(s)	329, 541
SaqAI	TTAA	4 cut(s)	306, 443, 485, 637
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	2 cut(s)	316, 610
Sau96I	GGNCC	3 cut(s)	49, 278, 470
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	3 cut(s)	109, 436, 627
SetI	ASST	5 cut(s)	109, 291, 363, 458, 475
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	2 cut(s)	49, 470
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	459, 561
SspMI	CTAG	2 cut(s)	71, 518
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	96, 113
TatI	WGTACW	2 cut(s)	328, 540
Tru1I	TTAA	4 cut(s)	306, 443, 485, 637
Tru9I	TTAA	4 cut(s)	306, 443, 485, 637
TscAI	CASTG	2 cut(s)	83, 400
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	456
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	17, 249, 612
TspRI	CASTG	2 cut(s)	83, 400
VpaK11BI	GGWCC	2 cut(s)	49, 470
VspI	ATTAAT	1 cut(s)	443
XapI	RAATTY	3 cut(s)	220, 236, 402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	71, 518
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.