Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

4044136 .. 4049485

Gene Structure 5350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAAGTTAGAGTTGGAGTTGTTGCTGATAATAGTGTTCGGAAAACCGCCTTCATGAACCTCAACTTGGTGCTGATACTAGTAGTACTCTGCAGCTTTGGATCAGACGACATAATCAAAGTTGAAGCTCTTTCAACTCGTCTTCCTGCTACTGAAGTGCAAGCCCTACGAGAAATTGCTACACAATTAAGAAAAGAGGACTGGAACTTTAGCGTAGACCCGTGCTTGAATGACACAACCCACACAAGCTGGACTACCCCAAAATCTGCTAGCACTCGATTCAACAACATACTCACTTGCAACTGCTCCTTCCCTGATGGCTCATGCCATGTTATCAACATTTTTCTTAAAGGGAAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCTTACCTTACACAAATCTATCTTGTGTACCTTGGCTCTAATCTTATCTCATGGTGTTCAAAGAAGCAACCAACAATTGCTCGTTCTAGTGCGGAGTCCGAATATCGCTCTTTAGCCCATGCAAGTGCTGAAACAACTTGGCTGGGATACTTATTGTATGAACTTGGTGTTCGGATTCAGTATCCTGTTTGGCTGCACTGTGACAATTTGAGTGCCACTTATATGGCTTCCAACCCTGTTTTCCACGCACACAGTCACACACCAAACATATTGAGCTTGACTACCACTTTGTCCTGGAAAAAGTTGCTTGTGGAAGTCACCGTGTATGCTTCATTCCGTCCAAGGATCAGCCAGCAGATTTACTCACCAAACCGCTTCATAAATCCCGTCATATGCTCTTTTTCGGCAAAATTGTCCGTCCAAGACCGCCAAAGGCTCACAGAAAATATGGTGGGATATATGGGAACAATCCTGGTCATCAAGATTTCTACTGAGACAACAAGTCAGTTTGGGGAACTTGTAGCTGATCCGGTCACCATTGAACTGCTGCATTACACAGAGAATAAGCCTGAGACTTTTGTATGTTTGAGTTCGGGTACGGTTTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

336

Amino Acids

37.43

Weight (kDa)

7.57

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	4 cut(s)	48, 488, 769, 823
AclWI	GGATC	3 cut(s)	109, 749, 917
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	4 cut(s)	87, 372, 425, 994
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	6 cut(s)	125, 135, 229, 283, 456, 938
AhdI	GACNNNNNGTC	1 cut(s)	897
AhlI	ACTAGT	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	689, 867
AjuI	GAANNNNNNNTTGG	5 cut(s)	29, 50, 82, 620, 652
AluBI	AGCT	5 cut(s)	96, 128, 249, 672, 920
AluI	AGCT	5 cut(s)	96, 128, 249, 672, 920
Alw26I	GTCTC	2 cut(s)	884, 962
AlwI	GGATC	3 cut(s)	109, 749, 917
ApeKI	GCWGC	3 cut(s)	93, 589, 943
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AsuHPI	GGTGA	3 cut(s)	706, 753, 922
AsuNHI	GCTAGC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	105, 576, 930
BccI	CCATC	2 cut(s)	311, 388
BciT130I	CCWGG	2 cut(s)	691, 869
BciVI	GTATCC	2 cut(s)	536, 588
BcoDI	GTCTC	2 cut(s)	884, 962
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	3 cut(s)	80, 270, 483
BfmI	CTRYAG	1 cut(s)	91
BfuI	GTATCC	2 cut(s)	536, 588
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	3 cut(s)	94, 590, 944
BlsI	GCNGC	3 cut(s)	95, 591, 945
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	691, 869
BmeRI	GACNNNNNGTC	1 cut(s)	897
BmrFI	CCNGG	2 cut(s)	691, 869
BmtI	GCTAGC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	427, 737
BsaWI	WCCGGW	1 cut(s)	925
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	691, 869
BseDI	CCNNGG	2 cut(s)	427, 737
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	879, 957
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	105, 576, 930
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	926
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	884, 962
Bsp143I	GATC	4 cut(s)	101, 358, 741, 922
BspACI	CCGC	4 cut(s)	48, 488, 769, 823
BspCNI	CTCAG	2 cut(s)	880, 958
BspHI	TCATGA	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	3 cut(s)	109, 749, 917
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	427, 737
BssMI	GATC	4 cut(s)	101, 358, 741, 922
BssT1I	CCWWGG	2 cut(s)	427, 737
Bst2UI	CCWGG	2 cut(s)	691, 869
Bst4CI	ACNGT	4 cut(s)	596, 650, 718, 997
BstC8I	GCNNGC	3 cut(s)	162, 271, 749
BstDEI	CTNAG	2 cut(s)	888, 966
BstEII	GGTNACC	1 cut(s)	928
BstKTI	GATC	4 cut(s)	104, 361, 744, 925
BstMAI	GTCTC	2 cut(s)	884, 962
BstMBI	GATC	4 cut(s)	101, 358, 741, 922
BstNI	CCWGG	2 cut(s)	691, 869
BstPI	GGTNACC	1 cut(s)	928
BstSCI	CCNGG	2 cut(s)	689, 867
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	105, 576, 930
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	2 cut(s)	536, 588
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	3 cut(s)	162, 271, 749
CciI	TCATGA	1 cut(s)	54
Csp6I	GTAC	4 cut(s)	86, 371, 424, 993
CviAII	CATG	5 cut(s)	55, 324, 329, 447, 515
CviQI	GTAC	4 cut(s)	86, 371, 424, 993
DdeI	CTNAG	2 cut(s)	888, 966
DpnI	GATC	4 cut(s)	103, 360, 743, 924
DpnII	GATC	4 cut(s)	101, 358, 741, 922
DriI	GACNNNNNGTC	1 cut(s)	897
Eam1105I	GACNNNNNGTC	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	427, 737
Eco57I	CTGAAG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	928
EcoO65I	GGTNACC	1 cut(s)	928
EcoRII	CCWGG	2 cut(s)	689, 867
EcoT14I	CCWWGG	2 cut(s)	427, 737
ErhI	CCWWGG	2 cut(s)	427, 737
FaeI	CATG	5 cut(s)	58, 327, 332, 450, 518
FatI	CATG	5 cut(s)	54, 323, 328, 446, 514
FauNDI	CATATG	1 cut(s)	788
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	94, 590, 944
Fsp4HI	GCNGC	3 cut(s)	94, 590, 944
FspBI	CTAG	3 cut(s)	80, 270, 483
GluI	GCNGC	3 cut(s)	94, 590, 944
GsaI	CCCAGC	1 cut(s)	542
HapII	CCGG	1 cut(s)	926
Hin1II	CATG	5 cut(s)	58, 327, 332, 450, 518
HinfI	GANTC	3 cut(s)	279, 491, 571
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	3 cut(s)	706, 753, 922
Hpy166II	GTNNAC	3 cut(s)	217, 371, 424
Hpy188I	TCNGA	4 cut(s)	42, 106, 496, 570
Hpy188III	TCNNGA	2 cut(s)	55, 877
Hpy8I	GTNNAC	3 cut(s)	217, 371, 424
HpyAV	CCTTC	2 cut(s)	61, 319
HpyCH4III	ACNGT	4 cut(s)	596, 650, 718, 997
HpyCH4V	TGCA	7 cut(s)	93, 160, 300, 389, 518, 592, 946
HpyF3I	CTNAG	2 cut(s)	888, 966
Hsp92II	CATG	5 cut(s)	58, 327, 332, 450, 518
Kzo9I	GATC	4 cut(s)	101, 358, 741, 922
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	3 cut(s)	105, 576, 930
MaeI	CTAG	3 cut(s)	80, 270, 483
MaeIII	GTNAC	5 cut(s)	393, 596, 650, 712, 928
MalI	GATC	4 cut(s)	103, 360, 743, 924
MboI	GATC	4 cut(s)	101, 358, 741, 922
MboII	GAAGA	1 cut(s)	134
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	5 cut(s)	174, 185, 471, 601, 806
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	2 cut(s)	71, 190
MseI	TTAA	2 cut(s)	188, 348
MslI	CAYNNNNRTG	2 cut(s)	519, 617
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	2 cut(s)	691, 869
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	2 cut(s)	691, 869
NdeI	CATATG	1 cut(s)	788
NdeII	GATC	4 cut(s)	101, 358, 741, 922
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	5 cut(s)	58, 327, 332, 450, 518
NmuCI	GTSAC	4 cut(s)	596, 650, 712, 928
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	279, 571
PfoI	TCCNGGA	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	95, 591, 945
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	689, 867
PspEI	GGTNACC	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	2 cut(s)	689, 867
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	4 cut(s)	87, 372, 425, 994
RsaNI	GTAC	4 cut(s)	86, 371, 424, 993
RseI	CAYNNNNRTG	2 cut(s)	519, 617
SaqAI	TTAA	2 cut(s)	188, 348
SatI	GCNGC	3 cut(s)	94, 590, 944
Sau3AI	GATC	4 cut(s)	101, 358, 741, 922
ScaI	AGTACT	1 cut(s)	87
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	691, 869
SetI	ASST	9 cut(s)	63, 98, 130, 251, 400, 405, 429, 674, 922
SfcI	CTRYAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	519, 617
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	5 cut(s)	174, 185, 471, 601, 806
SsiI	CCGC	4 cut(s)	48, 488, 769, 823
SspMI	CTAG	3 cut(s)	80, 270, 483
StyD4I	CCNGG	2 cut(s)	689, 867
StyI	CCWWGG	2 cut(s)	427, 737
TaaI	ACNGT	4 cut(s)	596, 650, 718, 997
TaqI	TCGA	1 cut(s)	277
TasI	AATT	5 cut(s)	174, 185, 471, 601, 806
TatI	WGTACW	2 cut(s)	85, 370
TfiI	GAWTC	2 cut(s)	279, 571
Tru1I	TTAA	2 cut(s)	188, 348
Tru9I	TTAA	2 cut(s)	188, 348
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	4 cut(s)	596, 650, 712, 928
TseI	GCWGC	3 cut(s)	93, 589, 943
Tsp45I	GTSAC	4 cut(s)	596, 650, 712, 928
TspDTI	ATGAA	5 cut(s)	43, 71, 570, 717, 763
TspGWI	ACGGA	2 cut(s)	722, 802
TspRI	CASTG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	3 cut(s)	80, 270, 483
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.