Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7785110 .. 7792013

Gene Structure 6904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAGCATAACATCATTATGCTCATGATCTTGGTTCTCTGCTTGATCTGCATAACATCACTCGAAGTTGAAGCAAAATGTTCGCCTCTTCCGCCTACTGAAGTGGAAGCACTAAAAGAAATTGGTAAGGAATTGAGGAAAAGGGACTGGAACTTTGAAGAAGACCCATGTAGCAATAAGTCAAGTTGGGCCAGCCCATTCGACACAAAGTCTGTGGATTGGCCTTCATCCATGAACAATGTCACTTGCAGCTGCTCCTTCCCTGATGAAACATACCACGTTATCAGCATAATTCTTCAAGGACAAGATTTACCTGGTGTACTTCCACCATCTATTGCGAGAAGGATAAGCAGTAACAGCTTTACTGGAACAATAGCTCCCGAGTTTTTTCAAAGTTGGAATCAACTAGAGGAATTGTATTTGACAAACAACTTGCTCACTGGGCCTATTCCAGACTGGATCAATAGCAGAGATTCAAGCGACTTTACAGATATTTCTTACAATAATTTTTCTGAGAGCTCTGCACAGCTACCATCTTGTACAGGAACCCTGAACTCCTTTAAAAGTTTTACTGCACGAGACAACTCATTATCTGGAGAGTGTCTGAAGAAATATCCTTGTGGCAAAGATCACTACTCATTGCATATAAATTGTGGTGGAGAAGCAACCACTATTGGAGGAACCAAGTTTGAAGAGGATGCAGACCTAGGAGGTCCAGCAAAATTCTTCTCTGTGAATATCTGGGGGTTCAGTAGCACTGGACAGTTCTGGGATAAGAACCCTACAGCTCAAGATTACATAGCAAAGAATTCTGACAGTGTCTTAAGGGCTAATCTAGAATGCAAGCTCAGGACCATTCAGACAAAGAAGATTGAAATGAAAGAAAAGTTCCCGTGCATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

301

Amino Acids

33.64

Weight (kDa)

5.01

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	722, 808
AcuI	CTGAAG	2 cut(s)	120, 626
AfaI	GTAC	2 cut(s)	321, 541
AfiI	CCNNNNNNNGG	1 cut(s)	898
AflII	CTTAAG	1 cut(s)	823
AgsI	TTSAA	7 cut(s)	71, 158, 299, 392, 477, 692, 875
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	313
AloI	GAACNNNNNNTCC	2 cut(s)	361, 393
AluBI	AGCT	7 cut(s)	252, 360, 377, 519, 529, 788, 847
AluI	AGCT	7 cut(s)	252, 360, 377, 519, 529, 788, 847
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	189, 221, 443
ApeKI	GCWGC	2 cut(s)	249, 252
ApoI	RAATTY	2 cut(s)	722, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspA2I	CCTAGG	1 cut(s)	706
AspS9I	GGNCC	4 cut(s)	189, 443, 713, 852
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	713, 852
AvrII	CCTAGG	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	239, 261
BccI	CCATC	2 cut(s)	337, 541
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	3 cut(s)	407, 707, 836
BfmI	CTRYAG	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	823
BisI	GCNGC	2 cut(s)	250, 253
BlnI	CCTAGG	1 cut(s)	706
BlsI	GCNGC	2 cut(s)	251, 254
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	713, 852
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	4 cut(s)	189, 443, 713, 852
BmiI	GGNNCC	2 cut(s)	547, 682
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	706
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse1I	ACTGG	5 cut(s)	152, 370, 445, 461, 763
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	2 cut(s)	227, 703
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	504, 862
BseNI	ACTGG	5 cut(s)	152, 370, 445, 461, 763
BseXI	GCAGC	2 cut(s)	239, 261
BsgI	GTGCAG	2 cut(s)	507, 558
BshFI	GGCC	3 cut(s)	191, 223, 445
BsiHKAI	GWGCWC	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	3 cut(s)	191, 223, 445
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	27, 45, 459, 628
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	3 cut(s)	191, 223, 445
BspCNI	CTCAG	2 cut(s)	505, 861
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	547, 682
BspPI	GGATC	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	539
BsrI	ACTGG	5 cut(s)	152, 370, 445, 461, 763
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	4 cut(s)	27, 45, 459, 628
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	765, 818
Bst6I	CTCTTC	2 cut(s)	93, 687
BstAFI	CTTAAG	1 cut(s)	823
BstAUI	TGTACA	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	193, 845
BstDEI	CTNAG	2 cut(s)	513, 848
BstF5I	GGATG	2 cut(s)	227, 703
BstKTI	GATC	4 cut(s)	30, 48, 462, 631
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	4 cut(s)	27, 45, 459, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 91, 357, 442
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	783
BstV1I	GCAGC	2 cut(s)	239, 261
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	191, 223, 445
BtsCI	GGATG	2 cut(s)	227, 703
BtsIMutI	CAGTG	3 cut(s)	438, 756, 823
Cac8I	GCNNGC	2 cut(s)	193, 845
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	4 cut(s)	189, 443, 713, 852
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	320, 540
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	4 cut(s)	25, 168, 232, 898
CviQI	GTAC	2 cut(s)	320, 540
DdeI	CTNAG	2 cut(s)	513, 848
DpnI	GATC	4 cut(s)	29, 47, 461, 630
DpnII	GATC	4 cut(s)	27, 45, 459, 628
DraI	TTTAAA	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	93, 687
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	2 cut(s)	93, 687
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	713, 852
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	2 cut(s)	120, 626
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	4 cut(s)	28, 171, 235, 901
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	24, 167, 231, 897
Fnu4HI	GCNGC	2 cut(s)	250, 253
FokI	GGATG	2 cut(s)	214, 710
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	250, 253
FspBI	CTAG	3 cut(s)	407, 707, 836
GluI	GCNGC	2 cut(s)	250, 253
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	191, 223, 445
Hin1II	CATG	4 cut(s)	28, 171, 235, 901
HinfI	GANTC	2 cut(s)	400, 473
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	4 cut(s)	514, 606, 814, 861
Hpy188III	TCNNGA	7 cut(s)	25, 380, 452, 594, 791, 836, 850
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	234, 268, 336
HpyCH4III	ACNGT	2 cut(s)	765, 818
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	8 cut(s)	51, 249, 524, 575, 643, 701, 843, 897
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 91, 357, 442
HpyF3I	CTNAG	2 cut(s)	513, 848
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	28, 171, 235, 901
Kzo9I	GATC	4 cut(s)	27, 45, 459, 628
LmnI	GCTCC	2 cut(s)	260, 382
Lsp1109I	GCAGC	2 cut(s)	239, 261
LweI	GCATC	1 cut(s)	688
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	3 cut(s)	407, 707, 836
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	241, 353
MalI	GATC	4 cut(s)	29, 47, 461, 630
MboI	GATC	4 cut(s)	27, 45, 459, 628
MboII	GAAGA	8 cut(s)	80, 170, 173, 287, 619, 704, 718, 880
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	8 cut(s)	120, 131, 291, 413, 505, 649, 722, 808
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	96, 129, 403, 671, 688, 704
MseI	TTAA	2 cut(s)	561, 824
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	252
MspCI	CTTAAG	1 cut(s)	823
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	48, 91, 357, 442
NdeII	GATC	4 cut(s)	27, 45, 459, 628
NlaIII	CATG	4 cut(s)	28, 171, 235, 901
NlaIV	GGNNCC	2 cut(s)	547, 682
NmuCI	GTSAC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	24
PctI	GAATGC	1 cut(s)	845
PfeI	GAWTC	2 cut(s)	400, 473
PflFI	GACNNNGTC	1 cut(s)	818
PkrI	GCNGC	2 cut(s)	251, 254
Psp124BI	GAGCTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	547, 682
PspPI	GGNCC	4 cut(s)	189, 443, 713, 852
PsyI	GACNNNGTC	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	2 cut(s)	321, 541
RsaNI	GTAC	2 cut(s)	320, 540
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	561, 824
SatI	GCNGC	2 cut(s)	250, 253
Sau3AI	GATC	4 cut(s)	27, 45, 459, 628
Sau96I	GGNCC	4 cut(s)	189, 443, 713, 852
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	521
SexAI	ACCWGGT	1 cut(s)	313
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	2 cut(s)	713, 852
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	789, 823
SmoI	CTYRAG	2 cut(s)	789, 823
Sse9I	AATT	8 cut(s)	120, 131, 291, 413, 505, 649, 722, 808
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	3 cut(s)	407, 707, 836
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	2 cut(s)	765, 818
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	63, 201
TasI	AATT	8 cut(s)	120, 131, 291, 413, 505, 649, 722, 808
TatI	WGTACW	2 cut(s)	319, 539
TfiI	GAWTC	2 cut(s)	400, 473
Tru1I	TTAA	2 cut(s)	561, 824
Tru9I	TTAA	2 cut(s)	561, 824
TscAI	CASTG	3 cut(s)	445, 763, 823
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	249, 252
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	5 cut(s)	17, 216, 248, 282, 893
TspRI	CASTG	3 cut(s)	445, 763, 823
Tth111I	GACNNNGTC	1 cut(s)	818
Vha464I	CTTAAG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	713, 852
XapI	RAATTY	2 cut(s)	722, 808
XbaI	TCTAGA	1 cut(s)	835
XmaJI	CCTAGG	1 cut(s)	706
XspI	CTAG	3 cut(s)	407, 707, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.