Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000217.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

65853 .. 67761

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000217.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgaagagctttgcagctgaaacagagactggaatgccaactgggttgtcaagaaaaatggcagaagttctcaacagtcaaaaacccatcttcttttgctatgtggctttgcttgttgtccttatttgcattgtacccatcaaatctcaagcacaatctgggactcttgcacctgatgaagtggaagcccttcgtgaaatagctgaacaactgaataagaaagactggaatttcagtgacccatgtagcaatgttcctacgttttcgagcccacatactaatcagtataacaatactttggtctgcaattgctccatctccagcaatgtatgccacattgaaagcatttatcttactggtcaggacctagatggtgttcttccagcatcgctggctaaactaccttatcttaagcaagttaatctgggtcagaatgatcttagtggttcgattccacgtgaatgggcttctaccaagttggaatttctggttctcagtgtgaacaacttatcaggacctatccctggctatttgggaaacataactactctcagagctctggccttggaaagcaacttattttctggacctgttccttcggacctgggaagattgattaacatggagattctgtcagtatgcttttcttttatcttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

219

Amino Acids

23.86

Weight (kDa)

5.03

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	229, 482
AcvI	CACGTG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	524
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	523, 603
AluBI	AGCT	4 cut(s)	9, 17, 203, 557
AluI	AGCT	4 cut(s)	9, 17, 203, 557
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	229, 482
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	4 cut(s)	364, 515, 587, 601
AvaII	GGWCC	4 cut(s)	364, 515, 587, 601
BanII	GRGCYC	2 cut(s)	272, 559
BbrPI	CACGTG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	4 cut(s)	95, 146, 323, 365
BciT130I	CCWGG	2 cut(s)	525, 605
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	525, 605
Bme18I	GGWCC	4 cut(s)	364, 515, 587, 601
BmgT120I	GGNCC	4 cut(s)	364, 515, 587, 601
BmrFI	CCNGG	2 cut(s)	525, 605
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	523, 564, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse1I	ACTGG	4 cut(s)	34, 46, 230, 361
Bse3DI	GCAATG	2 cut(s)	256, 331
BseBI	CCWGG	2 cut(s)	525, 605
BseDI	CCNNGG	3 cut(s)	523, 564, 604
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMI	GCAATG	2 cut(s)	256, 331
BseMII	CTCAG	2 cut(s)	508, 565
BseNI	ACTGG	4 cut(s)	34, 46, 230, 361
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	272, 559
Bsp143I	GATC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	507, 564
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	256, 331
BsrI	ACTGG	4 cut(s)	34, 46, 230, 361
BssECI	CCNNGG	3 cut(s)	523, 564, 604
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	525, 605
Bst4CI	ACNGT	1 cut(s)	77
BstAFI	CTTAAG	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	440, 494, 551
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 392
BstNI	CCWGG	2 cut(s)	525, 605
BstSCI	CCNGG	2 cut(s)	523, 603
BstV1I	GCAGC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	563
BtgZI	GCGATG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	241, 502
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr13I	GGNCC	4 cut(s)	364, 515, 587, 601
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	243, 622
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	3 cut(s)	440, 494, 551
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	2 cut(s)	272, 559
Eco47I	GGWCC	4 cut(s)	364, 515, 587, 601
Eco53kI	GAGCTC	1 cut(s)	557
Eco72I	CACGTG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	364, 515
EcoRII	CCWGG	2 cut(s)	523, 603
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	2 cut(s)	272, 559
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	2 cut(s)	246, 625
FaiI	YATR	8 cut(s)	102, 244, 276, 288, 331, 542, 623, 640
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	242, 621
Fnu4HI	GCNGC	1 cut(s)	15
FriOI	GRGCYC	2 cut(s)	272, 559
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	246, 625
HinfI	GANTC	3 cut(s)	163, 451, 628
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	432, 554, 601
Hpy188III	TCNNGA	5 cut(s)	51, 194, 362, 513, 585
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	200, 606
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	260, 457
HpyCH4V	TGCA	4 cut(s)	14, 129, 170, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 392
HpyF3I	CTNAG	3 cut(s)	440, 494, 551
HpySE526I	ACGT	2 cut(s)	260, 457
Hsp92II	CATG	2 cut(s)	246, 625
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	260, 457
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	4 cut(s)	16, 82, 371, 621
MfeI	CAATTG	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	272, 559
MluCI	AATT	3 cut(s)	229, 307, 482
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	3 cut(s)	411, 420, 618
MslI	CAYNNNNRTG	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	17
MspCI	CTTAAG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	525, 605
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	2 cut(s)	525, 605
MwoI	GCNNNNNNNGC	2 cut(s)	330, 392
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	246, 625
NmuCI	GTSAC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	451, 628
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	458
PmlI	CACGTG	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	458
PpuMI	RGGWCCY	2 cut(s)	364, 515
Psp124BI	GAGCTC	1 cut(s)	559
Psp5II	RGGWCCY	2 cut(s)	364, 515
Psp6I	CCWGG	2 cut(s)	523, 603
PspCI	CACGTG	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	523, 603
PspPI	GGNCC	4 cut(s)	364, 515, 587, 601
PspPPI	RGGWCCY	2 cut(s)	364, 515
PstNI	CAGNNNCTG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	3 cut(s)	411, 420, 618
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	4 cut(s)	364, 515, 587, 601
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	525, 605
SduI	GDGCHC	2 cut(s)	272, 559
SfaNI	GCATC	1 cut(s)	395
SinI	GGWCC	4 cut(s)	364, 515, 587, 601
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	2 cut(s)	147, 410
SmoI	CTYRAG	2 cut(s)	147, 410
Sse9I	AATT	3 cut(s)	229, 307, 482
SspMI	CTAG	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	523, 603
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	263, 460
TaqI	TCGA	2 cut(s)	266, 449
TasI	AATT	3 cut(s)	229, 307, 482
TfiI	GAWTC	2 cut(s)	451, 628
Tru1I	TTAA	3 cut(s)	411, 420, 618
Tru9I	TTAA	3 cut(s)	411, 420, 618
TscAI	CASTG	2 cut(s)	241, 502
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	17, 192
TspRI	CASTG	2 cut(s)	241, 502
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	4 cut(s)	364, 515, 587, 601
XapI	RAATTY	2 cut(s)	229, 482
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.