Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

86240870 .. 86317600

Gene Structure 76731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTTTGACTAAGCTGACTAAATTGATTGAACTAAGGATAAGCAGTAACAGCTTTACTGGAACAATAGCTCCCGAGTTTTTTCAAAGTTGGAATCACCTACAGGAATTAGAGATCCAAGCTAGTGGTTTAGAAGGGCCCATTCCATCTAGCATTTCTATGTTGAAAAATTTAACAGAGCTAAGGATTAGTGACTTAAATGGAAAGGGATCAGAATTTCCACCATTGAATGAAACAACAAGTTTGAAAAGATTAATGCTGAGGAGCTGTAATTTATCTGGACGTATTCCTGATTACATATCTGCAATGAAGTTATTGAATATGTTAGATCTCAGCTTCAACAGATTGGTTGGAAGTATTCCTGAATTTAAAATAAGCTTGCAGTACTTGTATTTGACAAACAACTTGCTCACTGGGCCTATTCCAGACTGGATCAATAGCAGAGATTCACGCTACGTTACAGATATTTCTTACAATAATTTTTCTGAGAGCTCTGCACAGCTACCGTCTTGTACAGGAACCCTGAACTCCTTTAAAAGTTTTACTGCACGAGACAACTCATTATCTGGAGAGTGTCTGAAGAAATATCCTTGTGGCAAAGATCACTACTCATTGCATATAAATTGTGGTGGAGAAGCAACCACTATTAGAGGAACCAAGTTTGAAGAGGATGCAGACCTAGGAGGTCCAACAAAATTCTTCTCTGTGAATTTCTGGGGGTTCAGTAGCACTGGACAGTTCTGGGATAAGAACCCTACAGCTCAAGATTTCATAGCAAAGAATGTATCTTTACTCACAATGGAGAACTCTGAGTTGTACACAAATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

276

Amino Acids

30.88

Weight (kDa)

5.98

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	109, 217, 440
AcsI	RAATTY	5 cut(s)	169, 215, 365, 695, 709
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	3 cut(s)	386, 514, 818
AgsI	TTSAA	8 cut(s)	32, 86, 166, 229, 247, 319, 340, 665
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	109, 217, 440
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	137, 416
ApaI	GGGCCC	1 cut(s)	141
ApoI	RAATTY	5 cut(s)	169, 215, 365, 695, 709
AseI	ATTAAT	1 cut(s)	254
AspA2I	CCTAGG	1 cut(s)	679
AspS9I	GGNCC	4 cut(s)	137, 138, 416, 686
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	686
AvrII	CCTAGG	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	141, 494
BauI	CACGAG	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	3 cut(s)	123, 150, 680
BfmI	CTRYAG	2 cut(s)	101, 756
BglII	AGATCT	1 cut(s)	328
BlnI	CCTAGG	1 cut(s)	679
BmcAI	AGTACT	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	686
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	4 cut(s)	137, 138, 416, 686
BmiI	GGNNCC	3 cut(s)	139, 520, 655
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	2 cut(s)	182, 260
BpuEI	CTTGAG	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	679
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse1I	ACTGG	4 cut(s)	64, 418, 434, 736
Bse3DI	GCAATG	2 cut(s)	312, 611
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	312, 611
BseMII	CTCAG	4 cut(s)	251, 346, 477, 801
BseNI	ACTGG	4 cut(s)	64, 418, 434, 736
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	141
BsgI	GTGCAG	2 cut(s)	480, 531
BshFI	GGCC	2 cut(s)	139, 418
BsiHKAI	GWGCWC	1 cut(s)	494
BsiHKCI	CYCGRG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	139, 418
BsoBI	CYCGRG	1 cut(s)	74
Bsp120I	GGGCCC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	141, 494
Bsp1407I	TGTACA	2 cut(s)	512, 816
Bsp143I	GATC	5 cut(s)	114, 209, 328, 432, 601
BspANI	GGCC	2 cut(s)	139, 418
BspCNI	CTCAG	4 cut(s)	252, 345, 478, 802
BspLI	GGNNCC	3 cut(s)	139, 520, 655
BspPI	GGATC	3 cut(s)	109, 217, 440
BsrDI	GCAATG	2 cut(s)	312, 611
BsrGI	TGTACA	2 cut(s)	512, 816
BsrI	ACTGG	4 cut(s)	64, 418, 434, 736
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	5 cut(s)	114, 209, 328, 432, 601
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	507, 738
Bst6I	CTCTTC	1 cut(s)	660
BstAUI	TGTACA	2 cut(s)	512, 816
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	7 cut(s)	12, 35, 182, 260, 332, 486, 810
BstF5I	GGATG	1 cut(s)	676
BstKTI	GATC	5 cut(s)	117, 212, 331, 435, 604
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	5 cut(s)	114, 209, 328, 432, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 415
BstSFI	CTRYAG	2 cut(s)	101, 756
BstSLI	GKGCMC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	114, 328
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	2 cut(s)	114, 328
BsuRI	GGCC	2 cut(s)	139, 418
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	411, 729
Cac8I	GCNNGC	1 cut(s)	380
Cfr13I	GGNCC	4 cut(s)	137, 138, 416, 686
Csp6I	GTAC	3 cut(s)	385, 513, 817
CviQI	GTAC	3 cut(s)	385, 513, 817
DdeI	CTNAG	7 cut(s)	12, 35, 182, 260, 332, 486, 810
DpnI	GATC	5 cut(s)	116, 211, 330, 434, 603
DpnII	GATC	5 cut(s)	114, 209, 328, 432, 601
DraI	TTTAAA	2 cut(s)	370, 535
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	2 cut(s)	141, 494
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	141, 494
ErhI	CCWWGG	1 cut(s)	679
FaiI	YATR	6 cut(s)	161, 299, 323, 618, 620, 773
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	2 cut(s)	141, 494
FspBI	CTAG	3 cut(s)	123, 150, 680
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	139, 418
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	2 cut(s)	94, 446
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	4 cut(s)	214, 487, 579, 811
Hpy188III	TCNNGA	7 cut(s)	74, 279, 290, 362, 425, 567, 764
Hpy8I	GTNNAC	1 cut(s)	819
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	507, 738
HpyCH4IV	ACGT	2 cut(s)	283, 456
HpyCH4V	TGCA	6 cut(s)	305, 382, 497, 548, 616, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 415
HpyF3I	CTNAG	7 cut(s)	12, 35, 182, 260, 332, 486, 810
HpySE526I	ACGT	2 cut(s)	283, 456
Kzo9I	GATC	5 cut(s)	114, 209, 328, 432, 601
LmnI	GCTCC	2 cut(s)	76, 264
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	3 cut(s)	123, 150, 680
MaeII	ACGT	2 cut(s)	283, 456
MaeIII	GTNAC	3 cut(s)	47, 191, 457
MalI	GATC	5 cut(s)	116, 211, 330, 434, 603
MboI	GATC	5 cut(s)	114, 209, 328, 432, 601
MboII	GAAGA	3 cut(s)	592, 677, 691
MflI	RGATCY	2 cut(s)	114, 328
MhlI	GDGCHC	2 cut(s)	141, 494
MmeI	TCCRAC	3 cut(s)	71, 331, 713
MnlI	CCTC	4 cut(s)	255, 644, 661, 677
MseI	TTAA	5 cut(s)	173, 197, 254, 369, 534
MslI	CAYNNNNRTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	51, 415
NdeII	GATC	5 cut(s)	114, 209, 328, 432, 601
NlaIV	GGNNCC	3 cut(s)	139, 520, 655
NmuCI	GTSAC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	94, 446
PshBI	ATTAAT	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	494
PspN4I	GGNNCC	3 cut(s)	139, 520, 655
PspOMI	GGGCCC	1 cut(s)	137
PspPI	GGNCC	4 cut(s)	137, 138, 416, 686
PsuI	RGATCY	2 cut(s)	114, 328
RsaI	GTAC	3 cut(s)	386, 514, 818
RsaNI	GTAC	3 cut(s)	385, 513, 817
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	494
SaqAI	TTAA	5 cut(s)	173, 197, 254, 369, 534
Sau3AI	GATC	5 cut(s)	114, 209, 328, 432, 601
Sau96I	GGNCC	4 cut(s)	137, 138, 416, 686
ScaI	AGTACT	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	141, 494
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	2 cut(s)	101, 756
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
SspMI	CTAG	3 cut(s)	123, 150, 680
SstI	GAGCTC	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	2 cut(s)	507, 738
TaiI	ACGT	2 cut(s)	286, 459
TatI	WGTACW	3 cut(s)	384, 512, 816
TfiI	GAWTC	2 cut(s)	94, 446
Tru1I	TTAA	5 cut(s)	173, 197, 254, 369, 534
Tru9I	TTAA	5 cut(s)	173, 197, 254, 369, 534
TscAI	CASTG	2 cut(s)	418, 736
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	246, 323, 760
TspRI	CASTG	2 cut(s)	418, 736
VpaK11BI	GGWCC	1 cut(s)	686
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	5 cut(s)	169, 215, 365, 695, 709
XmaJI	CCTAGG	1 cut(s)	679
XspI	CTAG	3 cut(s)	123, 150, 680
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.