Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029802.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 611

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ctcgacagtcaaaaacccatcttctttagctatgttgctgtgcttattgtgcttatttgcgttgtgcccatcaaatctcaaccacaatctgggactcttgcacctgatgaagtggaagcccttcgtgaaatagctgaacaactgaataagaaggactggaatttcagtgatccatgtagcaatgttccaactttttcgagcccacatactgatcagtacaacaatactcttgtctgcaattgctcattctccggcaatgtatgtcacattgaaaacatgtatgtgcctgttacaagccccacttttgttatgtttgctcaactcactgaagtattgaagttcataggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

4.71

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	89
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	272, 337
AluBI	AGCT	2 cut(s)	30, 134
AluI	AGCT	2 cut(s)	30, 134
AlwI	GGATC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	203
BccI	CCATC	2 cut(s)	26, 77
BclI	TGATCA	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	2 cut(s)	187, 262
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	2 cut(s)	187, 262
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	69, 203
Bsp143I	GATC	2 cut(s)	169, 211
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	187, 262
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	169, 211
Bst4CI	ACNGT	1 cut(s)	8
BstKTI	GATC	2 cut(s)	172, 214
BstMBI	GATC	2 cut(s)	169, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	172, 324
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	174, 277
CviJI	RGCY	5 cut(s)	30, 119, 134, 201, 297
CviKI_1	RGCY	5 cut(s)	30, 119, 134, 201, 297
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	2 cut(s)	171, 213
DpnII	GATC	2 cut(s)	169, 211
Eco24I	GRGCYC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	2 cut(s)	177, 280
FaiI	YATR	8 cut(s)	33, 175, 207, 262, 278, 282, 311, 344
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	173, 276
FbaI	TGATCA	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	203
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	2 cut(s)	177, 280
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	131, 145
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	101, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	177, 280
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	169, 211
LpnPI	CCDG	5 cut(s)	75, 117, 142, 265, 300
MaeIII	GTNAC	2 cut(s)	263, 289
MalI	GATC	2 cut(s)	171, 213
MboI	GATC	2 cut(s)	169, 211
MboII	GAAGA	1 cut(s)	13
MfeI	CAATTG	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	69, 203
MluCI	AATT	2 cut(s)	160, 238
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	1 cut(s)	252
MunI	CAATTG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	169, 211
NlaIII	CATG	2 cut(s)	177, 280
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	280
PciI	ACATGT	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	89
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	276
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	169, 211
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	2 cut(s)	69, 203
SetI	ASST	4 cut(s)	32, 106, 136, 349
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	160, 238
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	3, 197
TasI	AATT	2 cut(s)	160, 238
TatI	WGTACW	1 cut(s)	216
TscAI	CASTG	2 cut(s)	172, 331
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	123, 331
TspRI	CASTG	2 cut(s)	172, 331
Van91I	CCANNNNNTGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.