Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7848829 .. 7853767

Gene Structure 4939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAGATGGCAATTAGAGTTGGAGTCAGTGTTTGGAAAACCATCATGAACCTCAACTTGGTGGTGGTACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTGAAGCTCTTTCGACTCATCTTCCTGATACTGAAGTGCAAGCCCTCCGAGAAATTGCTACACAAATAGGAAAAGACTGGAACTTCAGGGTAGACCCGTGCAGAGGCTGGACTACCCCAAATTCTACTGACAATGAATTCAAAAACATTCTCAAGTGCAACTGCTCCTTCCCTGATGGCCCATGCCACGTCACCAACATTATTCTTAAAGGCCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCATACCTTACAGAAATGAACGTTTTCAAAAGCTTTTCTGCACCAAACATCAACTCATTATCTGGAGCGTGCCTGCAGAAATATCCATGTACAAAAGTTCAGTACTCATTGCATATAAATTGTGGTGGAGGAGCGACCACCATTGGAGGAGTCAAATTTGAAGATGATACAGATCTTGGAGGTGGAGCAAAATTTGTTCCAGTGAGAGCTAACTGGGGAACCAGTAGCACTGGAGTTTTCTGGGATACTAATGTCACCTCTAAAGACTACATAGCAAATAATAGTTCAAGCATTCCAAAACAAATATGTATATTGTGGTTGGAGTTTCAGTTGGAGCTTCAGTTTTGTGCCTGTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

238

Amino Acids

25.99

Weight (kDa)

7.48

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	220, 236, 509, 545
AcuI	CTGAAG	3 cut(s)	153, 169, 677
AfaI	GTAC	4 cut(s)	69, 330, 445, 458
AfiI	CCNNNNNNNGG	2 cut(s)	58, 203
AgsI	TTSAA	5 cut(s)	104, 241, 382, 515, 642
AhlI	ACTAGT	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	4 cut(s)	107, 387, 563, 691
AluI	AGCT	4 cut(s)	107, 387, 563, 691
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	207
AoxI	GGCC	2 cut(s)	277, 310
ApoI	RAATTY	4 cut(s)	220, 236, 509, 545
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	283, 601
BaeI	ACNNNNGTAYC	4 cut(s)	120, 153, 591, 624
BccI	CCATC	3 cut(s)	50, 269, 346
BciVI	GTATCC	1 cut(s)	592
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	79, 428
BfuI	GTATCC	1 cut(s)	592
BglII	AGATCT	2 cut(s)	316, 526
BmcAI	AGTACT	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	577
BpmI	CTGGAG	2 cut(s)	438, 606
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	525
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 668, 680, 698, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 203
Bse1I	ACTGG	5 cut(s)	182, 554, 572, 576, 589
Bse3DI	GCAATG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	525
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	58, 203
BseMI	GCAATG	1 cut(s)	461
BseNI	ACTGG	5 cut(s)	182, 554, 572, 576, 589
BseRI	GAGGAG	2 cut(s)	498, 516
BsgI	GTGCAG	2 cut(s)	220, 378
BshFI	GGCC	2 cut(s)	279, 312
BslI	CCNNNNNNNGG	2 cut(s)	58, 203
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	279, 312
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	89, 316, 526
BspANI	GGCC	2 cut(s)	279, 312
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	2 cut(s)	83, 432
BspPI	GGATC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	443
BsrI	ACTGG	5 cut(s)	182, 554, 572, 576, 589
BssMI	GATC	3 cut(s)	89, 316, 526
BstAUI	TGTACA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	141, 424, 428
BstKTI	GATC	3 cut(s)	92, 319, 529
BstMBI	GATC	3 cut(s)	89, 316, 526
BstSFI	CTRYAG	2 cut(s)	79, 428
BstX2I	RGATCY	2 cut(s)	316, 526
BstYI	RGATCY	2 cut(s)	316, 526
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	279, 312
BtrI	CACGTC	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	4 cut(s)	34, 76, 561, 582
Cac8I	GCNNGC	3 cut(s)	141, 424, 428
CaiI	CAGNNNCTG	1 cut(s)	207
CciI	TCATGA	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	4 cut(s)	68, 329, 444, 457
CviAII	CATG	3 cut(s)	46, 282, 441
CviJI	RGCY	8 cut(s)	107, 143, 207, 279, 312, 387, 563, 691
CviKI_1	RGCY	8 cut(s)	107, 143, 207, 279, 312, 387, 563, 691
CviQI	GTAC	4 cut(s)	68, 329, 444, 457
DpnI	GATC	3 cut(s)	91, 318, 528
DpnII	GATC	3 cut(s)	89, 316, 526
Eco57I	CTGAAG	3 cut(s)	153, 169, 677
EcoRI	GAATTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	49, 285, 444
FaiI	YATR	9 cut(s)	47, 283, 358, 442, 468, 470, 626, 661, 665
FatI	CATG	3 cut(s)	45, 281, 440
FblI	GTMKAC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	71
GsuI	CTGGAG	2 cut(s)	438, 606
HaeIII	GGCC	2 cut(s)	279, 312
Hin1II	CATG	3 cut(s)	49, 285, 444
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	3 cut(s)	24, 115, 504
HphI	GGTGA	2 cut(s)	283, 601
Hpy166II	GTNNAC	3 cut(s)	76, 193, 329
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	3 cut(s)	46, 125, 417
Hpy8I	GTNNAC	3 cut(s)	76, 193, 329
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	288, 375
HpyCH4V	TGCA	8 cut(s)	81, 139, 201, 258, 347, 395, 430, 466
HpySE526I	ACGT	2 cut(s)	288, 375
Hsp92II	CATG	3 cut(s)	49, 285, 444
Kzo9I	GATC	3 cut(s)	89, 316, 526
LmnI	GCTCC	5 cut(s)	269, 419, 485, 539, 688
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	2 cut(s)	288, 375
MaeIII	GTNAC	3 cut(s)	289, 351, 607
MalI	GATC	3 cut(s)	91, 318, 528
MboI	GATC	3 cut(s)	89, 316, 526
MboII	GAAGA	4 cut(s)	16, 113, 527, 702
MflI	RGATCY	2 cut(s)	316, 526
MluCI	AATT	7 cut(s)	12, 153, 220, 236, 472, 509, 545
MlyI	GAGTC	3 cut(s)	33, 109, 513
MmeI	TCCRAC	2 cut(s)	654, 666
MnlI	CCTC	7 cut(s)	62, 155, 197, 476, 494, 527, 622
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	306, 715
Mva1269I	GAATGC	1 cut(s)	645
NdeII	GATC	3 cut(s)	89, 316, 526
NlaIII	CATG	3 cut(s)	49, 285, 444
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	2 cut(s)	289, 607
PagI	TCATGA	1 cut(s)	45
PctI	GAATGC	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	377
PleI	GAGTC	3 cut(s)	32, 109, 512
PpsI	GAGTC	3 cut(s)	32, 109, 512
Psp1406I	AACGTT	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	2 cut(s)	83, 432
PstNI	CAGNNNCTG	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	316, 526
RsaI	GTAC	4 cut(s)	69, 330, 445, 458
RsaNI	GTAC	4 cut(s)	68, 329, 444, 457
SaqAI	TTAA	2 cut(s)	306, 715
Sau3AI	GATC	3 cut(s)	89, 316, 526
Sau96I	GGNCC	1 cut(s)	278
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	3 cut(s)	33, 109, 513
SfcI	CTRYAG	2 cut(s)	79, 428
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	7 cut(s)	12, 153, 220, 236, 472, 509, 545
SspMI	CTAG	1 cut(s)	71
TaiI	ACGT	2 cut(s)	291, 378
TaqI	TCGA	1 cut(s)	113
TasI	AATT	7 cut(s)	12, 153, 220, 236, 472, 509, 545
TatI	WGTACW	3 cut(s)	328, 443, 456
Tru1I	TTAA	2 cut(s)	306, 715
Tru9I	TTAA	2 cut(s)	306, 715
TscAI	CASTG	4 cut(s)	34, 83, 561, 589
TseFI	GTSAC	2 cut(s)	289, 607
Tsp45I	GTSAC	2 cut(s)	289, 607
TspDTI	ATGAA	4 cut(s)	17, 62, 249, 386
TspRI	CASTG	4 cut(s)	34, 83, 561, 589
XapI	RAATTY	4 cut(s)	220, 236, 509, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.