Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

7928238 .. 7931318

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGATGGCAATCGGAGCTGGGCTACTTCTTCCTAATAGTCGTCGGAAAACCATCATGAACCTCATCGTGGTGGTGATACTGGTTCTCTGCAATACTGGATTACTCAAAGTTGAGGCGCTTACAACTCGTCTTCCTGCTTCTGAAGTTGAAGCCCTAGAAGAAATTGCTACACAAATAGGGAAAAAAGACTGGGACTTCACAGTAGACCCGTGCCTGAATGACACAACCCACACAAGCTGGGCTACCCCAAAGCCTGCTGACAGGCCTCTATTCAACAACACCCTCACTTGCAACTGCTCCTTCACTGATGGCTCATGTCATGTCATTAACATTTTTCTTAAAGGGCAAGATCTTGCTGGTGTTGTTCCACCATCTATTTCGAAGTTACCCTACCTTACACAAATGAGAATTAGCAGTAACAACTTCACTGGAAGAATTCCGGATTATTTCCAGAGTTGGAATCAACTTACGCAATTGTATTTGACAAGCAACTTGCTCAATGGCTCTATTCCAGAATTGATTCAGGACAGAGATAACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.12

Weight (kDa)

6.71

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	152, 277
AluBI	AGCT	2 cut(s)	20, 240
AluI	AGCT	2 cut(s)	20, 240
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
BbsI	GAAGAC	1 cut(s)	125
BccI	CCATC	3 cut(s)	62, 305, 382
BfaI	CTAG	2 cut(s)	158, 544
BfoI	RGCGCY	1 cut(s)	122
BglII	AGATCT	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	4 cut(s)	87, 103, 197, 436
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	4 cut(s)	87, 103, 197, 436
BseYI	CCCAGC	2 cut(s)	20, 240
BshFI	GGCC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	383
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	383
BsrI	ACTGG	4 cut(s)	87, 103, 197, 436
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	306, 429
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	121
CviAII	CATG	3 cut(s)	58, 318, 323
CviJI	RGCY	9 cut(s)	20, 25, 155, 240, 245, 256, 268, 315, 507
CviKI_1	RGCY	9 cut(s)	20, 25, 155, 240, 245, 256, 268, 315, 507
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	438
FaeI	CATG	3 cut(s)	61, 321, 326
FaiI	YATR	3 cut(s)	59, 319, 324
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	57, 317, 322
FblI	GTMKAC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	158, 544
GlaI	GCGC	1 cut(s)	120
GsaI	CCCAGC	2 cut(s)	24, 244
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	61, 321, 326
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	463, 523
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	17, 48, 145
Hpy188III	TCNNGA	5 cut(s)	58, 443, 454, 515, 527
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	93, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	61, 321, 326
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	17, 305
MaeI	CTAG	2 cut(s)	158, 544
MaeIII	GTNAC	2 cut(s)	387, 419
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	5 cut(s)	16, 23, 125, 173, 447
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	5 cut(s)	165, 411, 438, 476, 518
MmeI	TCCRAC	2 cut(s)	26, 440
MnlI	CCTC	4 cut(s)	74, 109, 279, 296
MroI	TCCGGA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	330, 342
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	61, 321, 326
NspV	TTCGAA	1 cut(s)	383
PagI	TCATGA	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	463, 523
PspFI	CCCAGC	2 cut(s)	20, 240
PsuI	RGATCY	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	330, 342
Sau3AI	GATC	1 cut(s)	352
SetI	ASST	4 cut(s)	22, 66, 242, 399
SfuI	TTCGAA	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	5 cut(s)	165, 411, 438, 476, 518
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	541
SspMI	CTAG	2 cut(s)	158, 544
StuI	AGGCCT	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	383
TasI	AATT	5 cut(s)	165, 411, 438, 476, 518
TfiI	GAWTC	2 cut(s)	463, 523
Tru1I	TTAA	2 cut(s)	330, 342
Tru9I	TTAA	2 cut(s)	330, 342
TscAI	CASTG	2 cut(s)	313, 436
TspDTI	ATGAA	2 cut(s)	17, 74
TspRI	CASTG	2 cut(s)	313, 436
XapI	RAATTY	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	158, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.