Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

8100457 .. 8109831

Gene Structure 9375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAAAAGAAGAATATGGCATTTAGCGTTTTTCCGAAAAGCATCATGACTATGGTCATGATGGTTCTCTGCTTCATCTGCATAAACTCAGTCAGATCAGTTGAAGCACAATCCCCGCGCCTTCCTGTTCAAGAAGTGGAAGCACCGAGAGAAATTGGTTCACAATTGGGAAAAAAAGACTGGAACTTCGACGTAGACCCATGCCACAACGACACCAGCTGGGCTACCCCAACATCTGATCGTTACTCGCTATACACCAACATTGTCTCTTGCAACTGTTCCTACGTCCCTGATGGTGTATGCCACGTCACCAGTATTGTTCTGACAGGGCAAGATCTTGCTGGTGTACTTCCACCATCTATTGCAAAGTTACCCTGCCTTACACAAGTTTCTTTCACAAGGAACTACCTCAGTGGTAACATACCACTTGAATGGGCTTCTACAAAGTTGCAAAACCTGTCCCTTACTGTGAACAACTTATCAGGAACAATCCCTGCATACTTGGGGAACATTACTACCCTAAAACTACTGTTCCTAGACAGTAACCAATTTTATGGAACTGTTCCTCCTGAGCTTGGGAAGCTGGTTAACTTGGAGCGTCTCCTACTCGGTCAAAACAATCTCTCAGGAGAGTTGCCATTGGATCTCTCTAATCTAAATAAATTAAAAGTACTTAAGATTGGCAGTAACAACTTCAATGGAACAATACCTGATTTCTTTGAAAGTTGGAGTCAGCTTCAGAGTTTAGAGATCCAAGCTAGCGGTCTCCAAGGGCCCATTCCGCCTAGCATTTATTCCTTGAATAAATTAAGAATATTAAGGATCAGTGACTTGAGTGGATACAGTTCACCATTTCCAGACTTGAGAAATATGACACTTATGCACGTTTTAATGCTAAGGAGCTGCAATCTAGTTGGACCTATCCCTGATTACATATCGAAATTGACAGCATTACGTATATTAGATCTCAGCTTCAACAGATTGGAAGGAAGTATTCCTGACTTTGGAATAGGCATATTGGACAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

343

Amino Acids

37.89

Weight (kDa)

6.31

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	162 - 251	2.6e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	118
AciI	CCGC	3 cut(s)	116, 762, 782
AclWI	GGATC	3 cut(s)	651, 745, 830
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	2 cut(s)	348, 672
AfiI	CCNNNNNNNGG	2 cut(s)	575, 1004
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	7 cut(s)	104, 131, 431, 697, 722, 802, 976
AjiI	CACGTC	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	762, 794
AloI	GAACNNNNNNTCC	2 cut(s)	550, 582
AluBI	AGCT	7 cut(s)	219, 574, 583, 736, 758, 903, 972
AluI	AGCT	7 cut(s)	219, 574, 583, 736, 758, 903, 972
Alw26I	GTCTC	3 cut(s)	271, 605, 770
AlwI	GGATC	3 cut(s)	651, 745, 830
AoxI	GGCC	1 cut(s)	773
ApaI	GGGCCC	1 cut(s)	777
ApeKI	GCWGC	1 cut(s)	903
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	773, 774, 917
AsuHPI	GGTGA	2 cut(s)	301, 840
AsuNHI	GCTAGC	1 cut(s)	758
AvaII	GGWCC	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	890
BccI	CCATC	3 cut(s)	55, 287, 364
BciVI	GTATCC	1 cut(s)	833
BcoDI	GTCTC	3 cut(s)	271, 605, 770
BfaI	CTAG	4 cut(s)	536, 759, 786, 911
BfrI	CTTAAG	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	833
BglII	AGATCT	2 cut(s)	334, 964
BisI	GCNGC	1 cut(s)	904
BlsI	GCNGC	1 cut(s)	905
BmcAI	AGTACT	1 cut(s)	672
Bme18I	GGWCC	1 cut(s)	917
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	773, 774, 917
BmiI	GGNNCC	1 cut(s)	775
BmsI	GCATC	1 cut(s)	51
BmtI	GCTAGC	1 cut(s)	762
BoxI	GACNNNNGTC	1 cut(s)	53
Bpu10I	CCTNAGC	2 cut(s)	570, 896
BpuEI	CTTGAG	2 cut(s)	853, 883
BsaAI	YACGTR	1 cut(s)	956
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	1 cut(s)	769
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 1004
Bse1I	ACTGG	2 cut(s)	185, 312
BseDI	CCNNGG	1 cut(s)	769
BseLI	CCNNNNNNNGG	2 cut(s)	575, 1004
BseMII	CTCAG	5 cut(s)	102, 424, 561, 639, 982
BseNI	ACTGG	2 cut(s)	185, 312
BseSI	GKGCMC	1 cut(s)	777
BseXI	GCAGC	1 cut(s)	890
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	775
BslFI	GGGAC	2 cut(s)	272, 445
BslI	CCNNNNNNNGG	2 cut(s)	575, 1004
BsmAI	GTCTC	3 cut(s)	271, 605, 770
BsmBI	CGTCTC	1 cut(s)	605
BsmFI	GGGAC	2 cut(s)	272, 445
BsnI	GGCC	1 cut(s)	775
Bso31I	GGTCTC	1 cut(s)	770
Bsp120I	GGGCCC	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
BspACI	CCGC	3 cut(s)	116, 762, 782
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	5 cut(s)	101, 423, 562, 638, 981
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	2 cut(s)	45, 57
BspLI	GGNNCC	1 cut(s)	775
BspOI	GCTAGC	1 cut(s)	762
BspPI	GGATC	3 cut(s)	651, 745, 830
BspTI	CTTAAG	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	185, 312
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
BssT1I	CCWWGG	1 cut(s)	769
Bst4CI	ACNGT	6 cut(s)	278, 469, 531, 542, 562, 845
BstAFI	CTTAAG	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	760
BstDEI	CTNAG	6 cut(s)	88, 410, 570, 625, 896, 968
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	7 cut(s)	98, 241, 337, 646, 753, 825, 967
BstMAI	GTCTC	3 cut(s)	271, 605, 770
BstMBI	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 580, 781
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	777
BstSNI	TACGTA	1 cut(s)	956
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	890
BstX2I	RGATCY	4 cut(s)	334, 643, 750, 964
BstXI	CCANNNNNNTGG	2 cut(s)	432, 554
BstYI	RGATCY	4 cut(s)	334, 643, 750, 964
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	1 cut(s)	775
BtrI	CACGTC	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	418, 832
Cac8I	GCNNGC	1 cut(s)	760
CciI	TCATGA	2 cut(s)	45, 57
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	773, 774, 917
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	347, 671
CviAII	CATG	3 cut(s)	46, 58, 201
CviQI	GTAC	2 cut(s)	347, 671
DdeI	CTNAG	6 cut(s)	88, 410, 570, 625, 896, 968
DpnI	GATC	7 cut(s)	97, 240, 336, 645, 752, 824, 966
DpnII	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
EciI	GGCGGA	1 cut(s)	771
Eco105I	TACGTA	1 cut(s)	956
Eco130I	CCWWGG	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	917
Eco57I	CTGAAG	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	773
EcoT14I	CCWWGG	1 cut(s)	769
EcoT38I	GRGCYC	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	3 cut(s)	49, 61, 204
FaqI	GGGAC	2 cut(s)	272, 445
FatI	CATG	3 cut(s)	45, 57, 200
FauI	CCCGC	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	904
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	1 cut(s)	904
FspBI	CTAG	4 cut(s)	536, 759, 786, 911
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	904
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	775
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	49, 61, 204
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	730
HpaI	GTTAAC	1 cut(s)	589
HphI	GGTGA	2 cut(s)	301, 840
Hpy166II	GTNNAC	6 cut(s)	161, 196, 347, 472, 589, 848
Hpy188I	TCNGA	5 cut(s)	36, 95, 238, 324, 741
Hpy188III	TCNNGA	8 cut(s)	46, 58, 131, 483, 569, 627, 857, 998
Hpy8I	GTNNAC	6 cut(s)	161, 196, 347, 472, 589, 848
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	131, 980
HpyCH4III	ACNGT	6 cut(s)	278, 469, 531, 542, 562, 845
HpyCH4IV	ACGT	5 cut(s)	192, 285, 306, 885, 955
HpyCH4V	TGCA	8 cut(s)	4, 81, 273, 365, 451, 497, 883, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 580, 781
HpyF3I	CTNAG	6 cut(s)	88, 410, 570, 625, 896, 968
HpySE526I	ACGT	5 cut(s)	192, 285, 306, 885, 955
Hsp92II	CATG	3 cut(s)	49, 61, 204
HspAI	GCGC	1 cut(s)	118
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
LmnI	GCTCC	2 cut(s)	595, 900
Lsp1109I	GCAGC	1 cut(s)	890
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	4 cut(s)	536, 759, 786, 911
MaeII	ACGT	5 cut(s)	192, 285, 306, 885, 955
MaeIII	GTNAC	7 cut(s)	242, 307, 369, 416, 542, 686, 827
MalI	GATC	7 cut(s)	97, 240, 336, 645, 752, 824, 966
MboI	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
MboII	GAAGA	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	4 cut(s)	334, 643, 750, 964
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	6 cut(s)	153, 164, 548, 662, 806, 941
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	2 cut(s)	707, 895
MnlI	CCTC	2 cut(s)	419, 576
MseI	TTAA	6 cut(s)	588, 665, 675, 809, 818, 890
MslI	CAYNNNNRTG	2 cut(s)	50, 430
MspA1I	CMGCKG	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	674
MunI	CAATTG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	78, 580, 781
NdeII	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
NheI	GCTAGC	1 cut(s)	758
NlaIII	CATG	3 cut(s)	49, 61, 204
NlaIV	GGNNCC	1 cut(s)	775
NmuCI	GTSAC	2 cut(s)	307, 827
PagI	TCATGA	2 cut(s)	45, 57
PkrI	GCNGC	1 cut(s)	905
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
Ppu21I	YACGTR	1 cut(s)	956
PshAI	GACNNNNGTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	775
PspOMI	GGGCCC	1 cut(s)	773
PspPI	GGNCC	3 cut(s)	773, 774, 917
PsuI	RGATCY	4 cut(s)	334, 643, 750, 964
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	348, 672
RsaNI	GTAC	2 cut(s)	347, 671
RseI	CAYNNNNRTG	2 cut(s)	50, 430
SaqAI	TTAA	6 cut(s)	588, 665, 675, 809, 818, 890
SatI	GCNGC	1 cut(s)	904
Sau3AI	GATC	7 cut(s)	95, 238, 334, 643, 750, 822, 964
Sau96I	GGNCC	3 cut(s)	773, 774, 917
ScaI	AGTACT	1 cut(s)	672
SchI	GAGTC	1 cut(s)	739
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	917
SmiMI	CAYNNNNRTG	2 cut(s)	50, 430
SmlI	CTYRAG	3 cut(s)	674, 832, 862
SmoI	CTYRAG	3 cut(s)	674, 832, 862
SnaBI	TACGTA	1 cut(s)	956
Sse9I	AATT	6 cut(s)	153, 164, 548, 662, 806, 941
SsiI	CCGC	3 cut(s)	116, 762, 782
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	4 cut(s)	536, 759, 786, 911
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	6 cut(s)	278, 469, 531, 542, 562, 845
TaiI	ACGT	5 cut(s)	195, 288, 309, 888, 958
TaqI	TCGA	2 cut(s)	189, 938
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	6 cut(s)	153, 164, 548, 662, 806, 941
TatI	WGTACW	2 cut(s)	346, 670
Tru1I	TTAA	6 cut(s)	588, 665, 675, 809, 818, 890
Tru9I	TTAA	6 cut(s)	588, 665, 675, 809, 818, 890
TscAI	CASTG	2 cut(s)	418, 832
TseFI	GTSAC	2 cut(s)	307, 827
TseI	GCWGC	1 cut(s)	903
Tsp45I	GTSAC	2 cut(s)	307, 827
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	418, 832
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	4 cut(s)	536, 759, 786, 911
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.