Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

28144908 .. 28149822

Gene Structure 4915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG236100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAACCTCATCAGAGACTGGCTGCAAGGCCCTGGTTCCTGTAGGACTGGAGTTTGAGTCTCCAGGTGTTATTATTGACGGATTCCTTGCTGAGAAGGAAAGACAAGTGGGGGTAGGATTGCATGGTTTGTGCATGGGCGGCCCCATCATGTTGCAACAAACTCTGGCTGATATCAAGGCAGCGGGTGTACTGGAAGCTCTGAAAGAAATAGCTACACAAATAGGAAAGAAATATTGGAACTTTAGCGTCGACCCTTGCAGCAATGACAAGACCTGGGCCACTCCAATATCAGCTGCCAGGCCTCTGTTCAATAACACCGTCACCTGCAACTGCTCCTTCTCTGATGGTGCATGCCACGTCACCAACATGGCAGGACCTTGCTGGTGTGCTTCCACCGTCTATTGCAAAGTTACCCTACCTGATAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

15.23

Weight (kDa)

5.6

Isoelectric Point (pI)

20.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	141, 185
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	4 cut(s)	33, 64, 275, 299
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	3 cut(s)	200, 215, 296
AluI	AGCT	3 cut(s)	200, 215, 296
Alw26I	GTCTC	2 cut(s)	11, 66
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	30, 142, 279, 302
ApeKI	GCWGC	4 cut(s)	24, 182, 261, 296
AspS9I	GGNCC	4 cut(s)	31, 143, 279, 377
AsuHPI	GGTGA	2 cut(s)	316, 355
AvaII	GGWCC	1 cut(s)	377
BbvI	GCAGC	4 cut(s)	11, 194, 273, 283
BccI	CCATC	2 cut(s)	155, 341
BciT130I	CCWGG	4 cut(s)	35, 66, 277, 301
BcoDI	GTCTC	2 cut(s)	11, 66
BfmI	CTRYAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	5 cut(s)	25, 142, 183, 262, 297
BlsI	GCNGC	5 cut(s)	26, 143, 184, 263, 298
Bme1390I	CCNGG	4 cut(s)	35, 66, 277, 301
Bme18I	GGWCC	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	4 cut(s)	31, 143, 279, 377
BmiI	GGNNCC	3 cut(s)	7, 39, 145
BmrFI	CCNGG	4 cut(s)	35, 66, 277, 301
BpmI	CTGGAG	2 cut(s)	48, 71
BsaJI	CCNNGG	2 cut(s)	33, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	3 cut(s)	25, 54, 198
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	4 cut(s)	35, 66, 277, 301
BseDI	CCNNGG	2 cut(s)	33, 276
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	25, 54, 198
BseXI	GCAGC	4 cut(s)	11, 194, 273, 283
BshFI	GGCC	4 cut(s)	32, 144, 281, 304
BsmAI	GTCTC	2 cut(s)	11, 66
BsnI	GGCC	4 cut(s)	32, 144, 281, 304
BspACI	CCGC	2 cut(s)	141, 185
BspANI	GGCC	4 cut(s)	32, 144, 281, 304
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	7, 39, 145
BspMI	ACCTGC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	25, 54, 198
BssECI	CCNNGG	2 cut(s)	33, 276
Bst2UI	CCWGG	4 cut(s)	35, 66, 277, 301
Bst4CI	ACNGT	2 cut(s)	322, 400
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	11, 66
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	4 cut(s)	35, 66, 277, 301
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	4 cut(s)	33, 64, 275, 299
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	11, 194, 273, 283
BsuRI	GGCC	4 cut(s)	32, 144, 281, 304
BtrI	CACGTC	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	4 cut(s)	31, 143, 279, 377
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	5 cut(s)	125, 136, 151, 354, 370
CviJI	RGCY	9 cut(s)	24, 32, 144, 170, 200, 215, 281, 296, 304
CviKI_1	RGCY	9 cut(s)	24, 32, 144, 170, 200, 215, 281, 296, 304
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	377
EcoO109I	RGGNCCY	2 cut(s)	31, 377
EcoRII	CCWGG	4 cut(s)	33, 64, 275, 299
EcoRV	GATATC	1 cut(s)	175
FaeI	CATG	5 cut(s)	128, 139, 154, 357, 373
FaiI	YATR	5 cut(s)	126, 137, 152, 355, 371
FatI	CATG	5 cut(s)	124, 135, 150, 353, 369
FauI	CCCGC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	25, 142, 183, 262, 297
Fsp4HI	GCNGC	5 cut(s)	25, 142, 183, 262, 297
GluI	GCNGC	5 cut(s)	25, 142, 183, 262, 297
GsuI	CTGGAG	2 cut(s)	48, 71
HaeIII	GGCC	4 cut(s)	32, 144, 281, 304
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	5 cut(s)	128, 139, 154, 357, 373
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	59, 84
HphI	GGTGA	2 cut(s)	316, 355
Hpy166II	GTNNAC	2 cut(s)	191, 253
Hpy188I	TCNGA	3 cut(s)	16, 204, 346
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	2 cut(s)	191, 253
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	91, 349
HpyCH4III	ACNGT	2 cut(s)	322, 400
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	8 cut(s)	27, 124, 135, 157, 261, 330, 353, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	128, 139, 154, 357, 373
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	4 cut(s)	11, 194, 273, 283
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	322, 361, 412
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	19, 315
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	185, 296
MspR9I	CCNGG	4 cut(s)	35, 66, 277, 301
MvaI	CCWGG	4 cut(s)	35, 66, 277, 301
MwoI	GCNNNNNNNGC	1 cut(s)	141
NlaIII	CATG	5 cut(s)	128, 139, 154, 357, 373
NlaIV	GGNNCC	3 cut(s)	7, 39, 145
NmuCI	GTSAC	2 cut(s)	322, 361
NspI	RCATGY	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	357
PaqCI	CACCTGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	5 cut(s)	26, 143, 184, 263, 298
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	4 cut(s)	33, 64, 275, 299
PspGI	CCWGG	4 cut(s)	33, 64, 275, 299
PspN4I	GGNNCC	3 cut(s)	7, 39, 145
PspPI	GGNCC	4 cut(s)	31, 143, 279, 377
PspPPI	RGGWCCY	1 cut(s)	377
PstNI	CAGNNNCTG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	5 cut(s)	25, 142, 183, 262, 297
Sau96I	GGNCC	4 cut(s)	31, 143, 279, 377
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	35, 66, 277, 301
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	141, 185
SspI	AATATT	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	4 cut(s)	33, 64, 275, 299
TaaI	ACNGT	2 cut(s)	322, 400
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	252
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	322, 361
TseI	GCWGC	4 cut(s)	24, 182, 261, 296
Tsp45I	GTSAC	2 cut(s)	322, 361
TspGWI	ACGGA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	377
XceI	RCATGY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.