Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Reverse (-)

3952607 .. 3955183

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06831.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCATTGGACCCATCAAATCTCAAGCACAATCTGGGACTCTTGCCACCGAAGAAGTATTCTTACGGGTCAGGATCTAGATGGTGTTCTTCCAGCGTCACTGGCTAAGCTACCTTATCTTAAGCAAGTTAATCTGCTTCGGAATGATCTTAGTGGTTCGATTCCACGTGAATGGGCTTCTACCAAGTTGGAATATCTGGTGCTAAGGAGCTGCAATATAACAGGAAAAATCCCTGAATATATATCTACCATGACAAATCTGACTGTTTTAGATCTAAGCTTCAACAGATTGGAAGGGACCATTCCAAATTTTGCTAATATAATGCAGTTGTCAACAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

114

Amino Acids

12.81

Weight (kDa)

7.83

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	61 - 105	9.8e-08	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	307
AcvI	CACGTG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	3 cut(s)	109, 210, 279
AluI	AGCT	3 cut(s)	109, 210, 279
AlwI	GGATC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	9, 297
AvaII	GGWCC	2 cut(s)	9, 297
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
BbrPI	CACGTG	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	2 cut(s)	21, 74
BfaI	CTAG	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	119
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	211
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	9, 297
BmgT120I	GGNCC	2 cut(s)	9, 297
BmiI	GGNNCC	2 cut(s)	11, 298
Bpu10I	CCTNAGC	1 cut(s)	203
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	197
BslFI	GGGAC	2 cut(s)	50, 310
BsmFI	GGGAC	2 cut(s)	50, 310
Bsp143I	GATC	3 cut(s)	73, 145, 271
Bsp1720I	GCTNAGC	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	11, 298
BspPI	GGATC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	73, 145, 271
Bst4CI	ACNGT	1 cut(s)	265
BstAFI	CTTAAG	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	105, 149, 203, 275
BstKTI	GATC	3 cut(s)	76, 148, 274
BstMBI	GATC	3 cut(s)	73, 145, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	197
BstX2I	RGATCY	2 cut(s)	73, 271
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	2 cut(s)	73, 271
BtsIMutI	CAGTG	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	9, 297
CseI	GACGC	1 cut(s)	84
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	5 cut(s)	104, 109, 176, 210, 279
CviKI_1	RGCY	5 cut(s)	104, 109, 176, 210, 279
DdeI	CTNAG	4 cut(s)	105, 149, 203, 275
DpnI	GATC	3 cut(s)	75, 147, 273
DpnII	GATC	3 cut(s)	73, 145, 271
Eco47I	GGWCC	2 cut(s)	9, 297
Eco72I	CACGTG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	253
FaiI	YATR	5 cut(s)	218, 240, 242, 251, 320
FaqI	GGGAC	2 cut(s)	50, 310
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	2 cut(s)	38, 160
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	141, 261
Hpy188III	TCNNGA	2 cut(s)	71, 77
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	4, 213, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	4 cut(s)	105, 149, 203, 275
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	73, 145, 271
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	19, 56, 86, 105, 182, 207, 246
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	3 cut(s)	75, 147, 273
MboI	GATC	3 cut(s)	73, 145, 271
MboII	GAAGA	2 cut(s)	63, 80
MflI	RGATCY	2 cut(s)	73, 271
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	120, 129
MslI	CAYNNNNRTG	1 cut(s)	169
MspCI	CTTAAG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	3 cut(s)	73, 145, 271
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	11, 298
NmuCI	GTSAC	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	32
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	11, 298
PspPI	GGNCC	2 cut(s)	9, 297
PsuI	RGATCY	2 cut(s)	73, 271
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	120, 129
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	3 cut(s)	73, 145, 271
Sau96I	GGNCC	2 cut(s)	9, 297
SchI	GAGTC	1 cut(s)	32
SetI	ASST	5 cut(s)	111, 115, 169, 212, 281
SinI	GGWCC	2 cut(s)	9, 297
SmiMI	CAYNNNNRTG	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	22, 119
SmoI	CTYRAG	2 cut(s)	22, 119
Sse9I	AATT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	158
TasI	AATT	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	120, 129
Tru9I	TTAA	2 cut(s)	120, 129
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	96
TspRI	CASTG	1 cut(s)	105
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	9, 297
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	76
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.